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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Strain-level profiling of" (30 stories)

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Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis
Lead StoryNaturetech
Apr 21

Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE8tWXhsekJTUmNxUWV1U1hXN1AxTEtlNnhHLUdPamxZR1RvbXJGV1VrQ1E0NHRrTUphMXhiM21FdTRXM3U0cF8yblc2ajRQYnNVSzJ1MGlxX0hqc1VPbU9z?oc=5" target="_blank">Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Strain-level profiling of"

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29 stories displayed
Metagenomic profiling reveals shared resistome signatures between humans and pigs in Vietnamese smallholder farms
Naturegeneral

Metagenomic profiling reveals shared resistome signatures between humans and pigs in Vietnamese smallholder farms

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE13aGp3N0VteDlJNVZTSlZfNkVVWEVnNE5aSF81NTJpYUxVWWY0S2FRV21IbTB2T1U2aXVDLTg0Y0dxTUJkMGlUeFdLZ2RYOHZfZUJ6YXdZSDZIWU4zaml3?oc=5" target="_blank">Metagenomic profiling reveals shared resistome signatures between humans and pigs in Vietnamese smallholder farms</a>  <font color="#6f6f6f">Nature</font>

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Shallow Sequencing: Pros and Cons for Strain Analysis
Bioengineer.orgtech

Shallow Sequencing: Pros and Cons for Strain Analysis

<a href="https://news.google.com/rss/articles/CBMigwFBVV95cUxQblVEYmhRajFXZ2RqSGNwTk1qRUExendMYnJ0emRKeFh3dnhpYV9UMWRkbjBDWTdIWGtRVkc2b1Vja3ZBVUZPMG5kaVdpWVhmRENheTZtOHJNUi0tY21JMFppaFdydnRmLVlIR080ck1heFRvUFhnOGE4WG9zSkI2VVdaUQ?oc=5" target="_blank">Shallow Sequencing: Pros and Cons for Strain Analysis</a>  <font color="#6f6f6f">Bioengineer.org</font>

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Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data
Frontierstech

Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data

<a href="https://news.google.com/rss/articles/CBMikgFBVV95cUxNeU1KaFZRMS1ybFc5TFFYUDFTbGtsaDcyNktxaGI1blNkY3M3RFVRMnNOYl9yUjlKVmtCNlJKd3A4WmdhMkJ3ekxCekktaDF4aUg3WVR3eFJHbkI1NHozdkw5ZkJaUGFmcUV6bHd3bEZfS0YtRWowYzVDMFB2cEhCSFZ0SU9fNWdOSUtaYUdfbTVKZw?oc=5" target="_blank">Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data</a>  <font color="#6f6f6f">Frontiers</font>

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Strain-level profiling of viable microbial community by selective single-cell genome sequencing
Naturetech

Strain-level profiling of viable microbial community by selective single-cell genome sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1qdkRfN3ZXbTZnWHZRcFhzNThaa2JpTkhxaXEtZjNZMFhQZ1BjUUNJUEJacldsZlZDSUZ4YWJZUWFCTk11X0tDRVFpUGhaSzRXRC1JelkyT1dldW8tNlQ4?oc=5" target="_blank">Strain-level profiling of viable microbial community by selective single-cell genome sequencing</a>  <font color="#6f6f6f">Nature</font>

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Multi-cohort metagenomics reveals strain functional heterogeneity and demonstrates fecal microbial load correction improves colorectal cancer diagnostic models
Frontierstech

Multi-cohort metagenomics reveals strain functional heterogeneity and demonstrates fecal microbial load correction improves colorectal cancer diagnostic models

<a href="https://news.google.com/rss/articles/CBMilAFBVV95cUxNTkNlTHgzV0p2Tm12dE5iU1ZicEdxWUhEcGppNDVpWUpWWGY2aWZmeWd6bm83QU0wWmpBZVBZdGo4YmFHMXVkMGtXa3VvZWpDVmY2MHpUUllxTThjQlFDa25xX3dKcTdtbGJ3Y1ZYRmlNdEFNMU9QcjAySkpLQl94V2JTMWRROW81UXVSM0hqaGhOU09M?oc=5" target="_blank">Multi-cohort metagenomics reveals strain functional heterogeneity and demonstrates fecal microbial load correction improves colorectal cancer diagnostic models</a>  <font color="#6f6f6f">Frontiers</font>

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Baby-to-baby strain transmission shapes the developing gut microbiome
Naturetech

Baby-to-baby strain transmission shapes the developing gut microbiome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9GUXpiR3NSOW11TmpEcnJIYlhJTEpjbnp6aVBfYzQtcGMwOVh2LTFHdjdFS2JNc0ZkeldwX1RMV2NsY0Z6M3o3Vm94UER4bGNKVllRc0RGM0NiM3NkS18w?oc=5" target="_blank">Baby-to-baby strain transmission shapes the developing gut microbiome</a>  <font color="#6f6f6f">Nature</font>

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Gut microbiome composition and strain-sharing in multiplex autism spectrum disorder families
Naturetech

Gut microbiome composition and strain-sharing in multiplex autism spectrum disorder families

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9sbXNnSU1XVTRXQ3F0NHlyMTdVNDNXTGlIcUlCSnZ5RlpBajhyNUxONjJDT0xxM256QTNuZDF3Q25IZHlLMGhSbHRPMjI2OWY1djV3dVB0clF2LTZlZnpv?oc=5" target="_blank">Gut microbiome composition and strain-sharing in multiplex autism spectrum disorder families</a>  <font color="#6f6f6f">Nature</font>

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Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk
Naturetech

Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFAzSEZvQ21qWlFQVHhmRUFuTUloeXBNVHJkZ3JNOEJxUXRoZk52bENGNlBZY0xuZm45UnMzUTRPMEczZk5KdnZUdEo2UUlfNDctMXpuandvWUFKNzVldGdv?oc=5" target="_blank">Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk</a>  <font color="#6f6f6f">Nature</font>

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Genomic insights and metabolic profiling of gut commensal Luoshenia tenuis at strain level
Naturetech

Genomic insights and metabolic profiling of gut commensal Luoshenia tenuis at strain level

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9kWDZEc1lIdldCeDdETzUxSTYyWnFwOEJUNVhDSjhoMkxoVnltMmI2R3l6YXJpZGEyY1VfSGM0eWMxbThPekRuVnJiek9xSW1ZWEwwV0dTdy1UTW56S2Fn?oc=5" target="_blank">Genomic insights and metabolic profiling of gut commensal Luoshenia tenuis at strain level</a>  <font color="#6f6f6f">Nature</font>

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Strain level microbial detection and quantification with applications to single cell metagenomics
Naturetech

Strain level microbial detection and quantification with applications to single cell metagenomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBMRDY4dVBNMFpLTEpWN0VKTFdMVW9yQ3h1V29xX0VOblQwWGktcnR0Ujl1QlhYNVZUV09Sb19TNTlobnp4bDR3NGk5OHdSWHJRZ0luTU1nSURDNWU1UUw0?oc=5" target="_blank">Strain level microbial detection and quantification with applications to single cell metagenomics</a>  <font color="#6f6f6f">Nature</font>

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Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain
Naturetech

Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE41V19KRzlMQnRXR1VqNWtzVmtyOFdvSzNFSVJGRmZWTi1YV0hmZzIwTmZLR1dobGpueVpXckdUZU1FU0hBVFZoTzJVYUZORTlOaHBoTVBhX0Q5ZUN0MFhv?oc=5" target="_blank">Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain</a>  <font color="#6f6f6f">Nature</font>

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Rapid species-level metagenome profiling and containment estimation with sylph
Naturetech

Rapid species-level metagenome profiling and containment estimation with sylph

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1qczVveU43Y0pPV29mVXE4ODYybGZBTG9rc1FMQzRCSlZGOU5JMTV1czVkRmJaNWVLSEJyR2g5cks1SnIzb3p3bWxOUkxnaEhEMF82NmFOSElkRlZ6T3Y0?oc=5" target="_blank">Rapid species-level metagenome profiling and containment estimation with sylph</a>  <font color="#6f6f6f">Nature</font>

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Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
Naturetech

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA4MENNcC1pMmRQdE1ZbzBIdlc1UlRVWXp0TDY0cXNxZU51bnQ0RGNjbV94azJZMzduVjBkY3FRTUwxZmI2N1hqeGxGYTlJVHB3bjF2MFIwUUVULXVvTG5J?oc=5" target="_blank">Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps</a>  <font color="#6f6f6f">Nature</font>

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Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer
Naturetech

Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5RVlQtOEdmc1BMSFp1Y1R3TzJIQUpkNFZIRDhUMEJFR0tHWG41aG9qSFZObEdDYnhFaXE4UkVWQU5PUWh5blJjWDM5Y0g4RzlldGJOdEtWU0J5NlZNMkFN?oc=5" target="_blank">Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer</a>  <font color="#6f6f6f">Nature</font>

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Deep longitudinal lower respiratory tract microbiome profiling reveals genome-resolved functional and evolutionary dynamics in critical illness
Natureworld

Deep longitudinal lower respiratory tract microbiome profiling reveals genome-resolved functional and evolutionary dynamics in critical illness

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBDTXJuaGlrUjFGVXVYU0dNQ0xHRXVER2FTcC1MRlA2UlAxZ09oQ3lMZXp6Q0k0a0NCX05qWU0yeFEzLWZ1UlBoemhOTEQycjRYdW0xcXpOaFpQOENGcFQ0?oc=5" target="_blank">Deep longitudinal lower respiratory tract microbiome profiling reveals genome-resolved functional and evolutionary dynamics in critical illness</a>  <font color="#6f6f6f">Nature</font>

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Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
Naturetech

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1YNF9qYlVpb2JKbzFXRVRFd2I1WmYyNDU3MTFnb2tqV3RLY1hDNkFaSEo0enlRT1ktWGpRNWNFZEFQaWdDR2ltNzZtRHlHbGUzYUFCQkFPTkJXZ0dERGZZ?oc=5" target="_blank">Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis</a>  <font color="#6f6f6f">Nature</font>

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Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution
Naturetech

Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1XQ2JuSWRld05XTEpNTzl1eVFKdHo1cHVEd3FfTXk5azVOcFB6U3czcWFmY3VnLXh0OTlOSUFCNXBxYmpGV2lVQllQZ0x5QUdKbElHbWg3aFh1NDNlRzVn?oc=5" target="_blank">Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution</a>  <font color="#6f6f6f">Nature</font>

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Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Natureworld

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE93LWxzTW9udTg0bzBPU3RtNHZ1WEV0eTJXekNSb1oyV0p0ZGdhY1R6X1Jabk1iLVE2dFlnRHEzWDFLNzhTY1JLUk0zbldISUJ4UkRUdHhYYVFfRHJNVHAw?oc=5" target="_blank">Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4</a>  <font color="#6f6f6f">Nature</font>

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Gut microbiome strain-sharing within isolated village social networks
Naturetech

Gut microbiome strain-sharing within isolated village social networks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE92UnJrMkVJVnVqNU5ScEpkNFhPUUNOZ28zZmZTNFA5dUN4U1VLRFktVXZ2NUYyZTFKWndvSnZQRVFlZFNjWE4zTlNWaEZBdjRJS2YyVEJiWTVuWmE3ay04?oc=5" target="_blank">Gut microbiome strain-sharing within isolated village social networks</a>  <font color="#6f6f6f">Nature</font>

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Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing
Naturetech

Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBZcTVUaDhGdFU1QW5lYlBZUDdhVEl5ZHVuQjY2TXNtSWtDM2k1cW83Mi1KZGU3WDVZbFF4NXB2ak94c1VyTlFEOEFITExsVEl4VGIyRlRLSzBCSFFBSUxJ?oc=5" target="_blank">Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing</a>  <font color="#6f6f6f">Nature</font>

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Short- and long-read metagenomics expand individualized structural variations in gut microbiomes
Naturegeneral

Short- and long-read metagenomics expand individualized structural variations in gut microbiomes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9hOEszMXVwemVlcEdtTFpTLVBnT3VVUGlvNG1iRlV6bzM1ZHdGTjBhMC13X1VtRzRiblpmVGh0RWVONkNDdUZpb21adkd2VUg2a3UzSEpjTzk3LTV3emRz?oc=5" target="_blank">Short- and long-read metagenomics expand individualized structural variations in gut microbiomes</a>  <font color="#6f6f6f">Nature</font>

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Strain profiling and epidemiology of bacterial species from metagenomic sequencing
Naturetech

Strain profiling and epidemiology of bacterial species from metagenomic sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5JdjJFakZVZXhqbHhpQU40QjRQNFM0cGFlRm1rQld6M2NFZWlhYlFUMFR6WXY1T2U3dkxfSjJQNEl6c25iaHdxT1ZNTEV4OFllYW13WUxISnVwaFp2U2Jj?oc=5" target="_blank">Strain profiling and epidemiology of bacterial species from metagenomic sequencing</a>  <font color="#6f6f6f">Nature</font>

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Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine
Naturegeneral

Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9DODFzalNaUllPaWxRelk1NWxIdGc4QnY5UGxGdFNESDNqSWtyQ2RJTTNzMHhyMS10ZzVYNFFyalpPUVFLc0tWTmpFcElZTUpWUnVvcFJmZHc0b3lUQWpJ?oc=5" target="_blank">Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine</a>  <font color="#6f6f6f">Nature</font>

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The person-to-person transmission landscape of the gut and oral microbiomes
Naturegeneral

The person-to-person transmission landscape of the gut and oral microbiomes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5ULWZDTDRWWHYtLVZBS0lBNHBSYnotRjFxQkVsSnhlSC1wOTA4dVVHLXRsZjJsNUFsNTU4UjdTWm9FbUFMZC1ZVWtkVmxFMkdrR0ViV1p0MW1nYVlaNW9V?oc=5" target="_blank">The person-to-person transmission landscape of the gut and oral microbiomes</a>  <font color="#6f6f6f">Nature</font>

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Functional and genomic profiling of lactic acid bacteria reveals specific traits as potential probiotics
Frontierstech

Functional and genomic profiling of lactic acid bacteria reveals specific traits as potential probiotics

<a href="https://news.google.com/rss/articles/CBMilAFBVV95cUxOUGd1Nnd6M3N3U0c3Qnk2bkM0YVphVzJVd2x3Y3A3b1VIcWYyaEliWF8zblZjNF94S0pYMjd1R1pBZENSbXQ5dHVMQlJQMmFWRGdsX01BS1ExdElZR0VVZFdGN3pKRGFfanQ1anVGLW1OUllFSzRlUnJEOUtHb3Y2cDlsY00wX01HbFQ5em95U2E3cDdY?oc=5" target="_blank">Functional and genomic profiling of lactic acid bacteria reveals specific traits as potential probiotics</a>  <font color="#6f6f6f">Frontiers</font>

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DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq | Communications Biology
Naturetech

DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq | Communications Biology

<a href="https://news.google.com/rss/articles/CBMiXkFVX3lxTE0tWXJLQkJIVTY3U1pSQ0duNlVuZi1aLTh2cnlJVDNGcE9fOTh5VUM1RDd6empTWXRJdTh0RVJkcHhWVDN1ZUhzRld4MGZSV2VQcFRDOWNtNHY0TldVR2c?oc=5" target="_blank">DNA enrichment and tagmentation method for species-level identification and strain-level differentiation using ON-rep-seq | Communications Biology</a>  <font color="#6f6f6f">Nature</font>

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Detecting microbial engraftment after FMT using placebo sequencing and culture enriched metagenomics to sort signals from noise
Naturegeneral

Detecting microbial engraftment after FMT using placebo sequencing and culture enriched metagenomics to sort signals from noise

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9lY1pEdXl2d2plbnVUTWZhRXdOTW5DQ0xBQ0Fxa0FxeFJXSTdNeUthREU5UXZza05QNC1JdkNHcEFWQldpNnNSUHF5UWhRMkVxN3JoaXhaWGk1ZkNHU1dj?oc=5" target="_blank">Detecting microbial engraftment after FMT using placebo sequencing and culture enriched metagenomics to sort signals from noise</a>  <font color="#6f6f6f">Nature</font>

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Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome
ASM Journalstech

Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome

<a href="https://news.google.com/rss/articles/CBMiakFVX3lxTE9Gekg5YmVyeUY4NnJJbEJwRmJtNXdqaGZFLVROVS1LSjdVYXBwcW1qWF96Z054UWdPZV9weXlVQ1cxTDJpY05yamdZYVhYdWpoclVQWFFHMGRsRWdfeUhaXzNnV0tIdEhVVWc?oc=5" target="_blank">Informed interpretation of metagenomic data by StrainPhlAn enables strain retention analyses of the upper airway microbiome</a>  <font color="#6f6f6f">ASM Journals</font>

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High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome
Science | AAAStech

High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome

<a href="https://news.google.com/rss/articles/CBMiYEFVX3lxTE0ycXo1cUNrOVdUYjZzR09ZbVZwdWxHU3NJS2tTZjdESUZVZXNKY1FLRk1LRDU1aExlX3VGTkliY2MxRHpKdW5HTGJrZEpnVU9xaVZITjJKVU1SNDQ1Y0xMZA?oc=5" target="_blank">High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome</a>  <font color="#6f6f6f">Science | AAAS</font>

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