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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Strain-level metagenomic" (30 stories)

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Strain-level transmission inference across multi-kingdom metagenomic data using TRACS
Lead StoryNaturetech
Apr 24

Strain-level transmission inference across multi-kingdom metagenomic data using TRACS

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5yeWwxRnNLOTRDUXhPVkhfRkhsZDhhaTNETXc3MWFWa0VZUGozeUJEY1dhSVFNMDNzbGJnTGFWRDR6eU9FQ1BfTEpqNUVYNFJqekNoR0FUWkdqQmd0TFV3?oc=5" target="_blank">Strain-level transmission inference across multi-kingdom metagenomic data using TRACS</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Strain-level metagenomic"

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Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis
Naturetech

Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE8tWXhsekJTUmNxUWV1U1hXN1AxTEtlNnhHLUdPamxZR1RvbXJGV1VrQ1E0NHRrTUphMXhiM21FdTRXM3U0cF8yblc2ajRQYnNVSzJ1MGlxX0hqc1VPbU9z?oc=5" target="_blank">Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis</a>  <font color="#6f6f6f">Nature</font>

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TRACS Enables Strain-Level Tracking of Microbial Transmission
Genetic Engineering and Biotechnology Newstech

TRACS Enables Strain-Level Tracking of Microbial Transmission

<a href="https://news.google.com/rss/articles/CBMipAFBVV95cUxOVjdHWXZsb252NWtwZGxhN0NmaHVXMnRkUWVOdkltSks4a0d3NGVKaWY5U3AwMEVPNmlxZktpcnU3ZHNFWjJXTzZzQnJzMGNuaDNHeEFQRUZfZkdWSUd3QV9jRk45RnZCVzVzWXMySy12TFVrUnI4dE9WUkFjVTZNZTlMeFZTRkJiZG1KV2YxbS1xNkVlXzNYTjN5elJrV25kNF9jag?oc=5" target="_blank">TRACS Enables Strain-Level Tracking of Microbial Transmission</a>  <font color="#6f6f6f">Genetic Engineering and Biotechnology News</font>

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High exposure, rapid turnover: strain-level dynamics of Klebsiella pneumoniae carriage in community and hospitalized populations in Bangladesh
ASM Journalstech

High exposure, rapid turnover: strain-level dynamics of Klebsiella pneumoniae carriage in community and hospitalized populations in Bangladesh

<a href="https://news.google.com/rss/articles/CBMia0FVX3lxTE9Wcjc4ZEg0eEdoclJnSHFfTjVYRmp1RDhtaEg4SGNHWW1BZ203Z1B6MVI0b3BIWXkzUFRfcGxXZ2tGOGJxMmVNQlgtRkMtRWg4SnhRNWlZaThWdTVvbXppTHU5LWNjV281TkxB?oc=5" target="_blank">High exposure, rapid turnover: strain-level dynamics of Klebsiella pneumoniae carriage in community and hospitalized populations in Bangladesh</a>  <font color="#6f6f6f">ASM Journals</font>

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Shallow Sequencing: Pros and Cons for Strain Analysis
Bioengineer.orgtech

Shallow Sequencing: Pros and Cons for Strain Analysis

<a href="https://news.google.com/rss/articles/CBMigwFBVV95cUxQblVEYmhRajFXZ2RqSGNwTk1qRUExendMYnJ0emRKeFh3dnhpYV9UMWRkbjBDWTdIWGtRVkc2b1Vja3ZBVUZPMG5kaVdpWVhmRENheTZtOHJNUi0tY21JMFppaFdydnRmLVlIR080ck1heFRvUFhnOGE4WG9zSkI2VVdaUQ?oc=5" target="_blank">Shallow Sequencing: Pros and Cons for Strain Analysis</a>  <font color="#6f6f6f">Bioengineer.org</font>

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Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data
Frontierstech

Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data

<a href="https://news.google.com/rss/articles/CBMikgFBVV95cUxNeU1KaFZRMS1ybFc5TFFYUDFTbGtsaDcyNktxaGI1blNkY3M3RFVRMnNOYl9yUjlKVmtCNlJKd3A4WmdhMkJ3ekxCekktaDF4aUg3WVR3eFJHbkI1NHozdkw5ZkJaUGFmcUV6bHd3bEZfS0YtRWowYzVDMFB2cEhCSFZ0SU9fNWdOSUtaYUdfbTVKZw?oc=5" target="_blank">Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data</a>  <font color="#6f6f6f">Frontiers</font>

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Metagenomic growth rate inferences of strains in situ
Science | AAAStech

Metagenomic growth rate inferences of strains in situ

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBra1FkLU02WEttcnJuVTRKczVuODlMUF9GenQxcFhUYUtWa0xBek5fM3QyeG5qX2h4aGlNS0FObVpQVlY4XzJKaHFpWXpqQUhINE1XTnB6TWFiQ2NBQUFN?oc=5" target="_blank">Metagenomic growth rate inferences of strains in situ</a>  <font color="#6f6f6f">Science | AAAS</font>

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Baby-to-baby strain transmission shapes the developing gut microbiome
Naturetech

Baby-to-baby strain transmission shapes the developing gut microbiome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9GUXpiR3NSOW11TmpEcnJIYlhJTEpjbnp6aVBfYzQtcGMwOVh2LTFHdjdFS2JNc0ZkeldwX1RMV2NsY0Z6M3o3Vm94UER4bGNKVllRc0RGM0NiM3NkS18w?oc=5" target="_blank">Baby-to-baby strain transmission shapes the developing gut microbiome</a>  <font color="#6f6f6f">Nature</font>

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An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data | Microbiology Spectrum
ASM Journalstech

An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data | Microbiology Spectrum

<a href="https://news.google.com/rss/articles/CBMiakFVX3lxTE1PRDB6emVHRDFBYWdvZjJOdlhsR2d0dERWc1hTd0h2ZlJBbS1SVjRKd1h6Y3kybWtBWmNLcEdqeVdhMG1BMU9iWXdhYmR1YjZ4VkVzRnRUb2VOVUZlMm1pWTJfTDBCMzV5UUE?oc=5" target="_blank">An integrated strain-level analytic pipeline utilizing longitudinal metagenomic data | Microbiology Spectrum</a>  <font color="#6f6f6f">ASM Journals</font>

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Strain level microbial detection and quantification with applications to single cell metagenomics
Naturetech

Strain level microbial detection and quantification with applications to single cell metagenomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBMRDY4dVBNMFpLTEpWN0VKTFdMVW9yQ3h1V29xX0VOblQwWGktcnR0Ujl1QlhYNVZUV09Sb19TNTlobnp4bDR3NGk5OHdSWHJRZ0luTU1nSURDNWU1UUw0?oc=5" target="_blank">Strain level microbial detection and quantification with applications to single cell metagenomics</a>  <font color="#6f6f6f">Nature</font>

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Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
Naturetech

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA4MENNcC1pMmRQdE1ZbzBIdlc1UlRVWXp0TDY0cXNxZU51bnQ0RGNjbV94azJZMzduVjBkY3FRTUwxZmI2N1hqeGxGYTlJVHB3bjF2MFIwUUVULXVvTG5J?oc=5" target="_blank">Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps</a>  <font color="#6f6f6f">Nature</font>

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Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk
Naturetech

Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFAzSEZvQ21qWlFQVHhmRUFuTUloeXBNVHJkZ3JNOEJxUXRoZk52bENGNlBZY0xuZm45UnMzUTRPMEczZk5KdnZUdEo2UUlfNDctMXpuandvWUFKNzVldGdv?oc=5" target="_blank">Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk</a>  <font color="#6f6f6f">Nature</font>

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Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing
Naturetech

Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBZcTVUaDhGdFU1QW5lYlBZUDdhVEl5ZHVuQjY2TXNtSWtDM2k1cW83Mi1KZGU3WDVZbFF4NXB2ak94c1VyTlFEOEFITExsVEl4VGIyRlRLSzBCSFFBSUxJ?oc=5" target="_blank">Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing</a>  <font color="#6f6f6f">Nature</font>

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Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer
Naturetech

Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5RVlQtOEdmc1BMSFp1Y1R3TzJIQUpkNFZIRDhUMEJFR0tHWG41aG9qSFZObEdDYnhFaXE4UkVWQU5PUWh5blJjWDM5Y0g4RzlldGJOdEtWU0J5NlZNMkFN?oc=5" target="_blank">Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer</a>  <font color="#6f6f6f">Nature</font>

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HyLight: Strain aware assembly of low coverage metagenomes
Naturetech

HyLight: Strain aware assembly of low coverage metagenomes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBhZVVoc1pUazcxcVR3VEE2UjUweE5OcWl2dXM3TEFHeHEtOUN0YnFvWG11WWF6QUE0N0VvWnNzaHdXR0NXd1ZPdzJtTG1CdEFFUzQ4bjdqYVA3XzVnem04?oc=5" target="_blank">HyLight: Strain aware assembly of low coverage metagenomes</a>  <font color="#6f6f6f">Nature</font>

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Strain-level profiling of viable microbial community by selective single-cell genome sequencing
Naturetech

Strain-level profiling of viable microbial community by selective single-cell genome sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1qdkRfN3ZXbTZnWHZRcFhzNThaa2JpTkhxaXEtZjNZMFhQZ1BjUUNJUEJacldsZlZDSUZ4YWJZUWFCTk11X0tDRVFpUGhaSzRXRC1JelkyT1dldW8tNlQ4?oc=5" target="_blank">Strain-level profiling of viable microbial community by selective single-cell genome sequencing</a>  <font color="#6f6f6f">Nature</font>

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Rapid species-level metagenome profiling and containment estimation with sylph
Naturetech

Rapid species-level metagenome profiling and containment estimation with sylph

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1qczVveU43Y0pPV29mVXE4ODYybGZBTG9rc1FMQzRCSlZGOU5JMTV1czVkRmJaNWVLSEJyR2g5cks1SnIzb3p3bWxOUkxnaEhEMF82NmFOSElkRlZ6T3Y0?oc=5" target="_blank">Rapid species-level metagenome profiling and containment estimation with sylph</a>  <font color="#6f6f6f">Nature</font>

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Strain-level microbial epidemiology and population genomics from shotgun metagenomics
Naturetech

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

<a href="https://news.google.com/rss/articles/CBMiVEFVX3lxTE1fcVNKYXItbmR1TTM5YTdqQ05abzViX2dSaUR1Smd6YU9rZ3UySjZyalE2cW52U2U0U2d4ZUVDRWlRc1JheHhtbFg4eG1iX05aTUF5Qw?oc=5" target="_blank">Strain-level microbial epidemiology and population genomics from shotgun metagenomics</a>  <font color="#6f6f6f">Nature</font>

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A new strain of thought in gut metagenomics
Naturetech

A new strain of thought in gut metagenomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE4zckZ0RjJlQUt6VUFHd05QOTNMRzFhREwxQjJMLU5salVFbGZhWTVmOEZOaGw4aUtjenJXVWMtanpnOWxueUh3eGhtZjBwMmF5clVscnFMSnNjOEdKSmQ4?oc=5" target="_blank">A new strain of thought in gut metagenomics</a>  <font color="#6f6f6f">Nature</font>

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Strainberry: automated strain separation in low-complexity metagenomes using long reads
Naturetech

Strainberry: automated strain separation in low-complexity metagenomes using long reads

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE83QlBoV2ZnTDE2Q01CUm9oVjZudVRVZHpGT19IOTg2MzZLSVc1Q2d6UVZxVFI4N1NHdGc1WDdsa2d6dUJWMVc1d0xPRms4ZE5RQ2w0a1ZodldnVHNUYUVV?oc=5" target="_blank">Strainberry: automated strain separation in low-complexity metagenomes using long reads</a>  <font color="#6f6f6f">Nature</font>

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Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine
Naturegeneral

Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9DODFzalNaUllPaWxRelk1NWxIdGc4QnY5UGxGdFNESDNqSWtyQ2RJTTNzMHhyMS10ZzVYNFFyalpPUVFLc0tWTmpFcElZTUpWUnVvcFJmZHc0b3lUQWpJ?oc=5" target="_blank">Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine</a>  <font color="#6f6f6f">Nature</font>

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Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution
Naturetech

Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1XQ2JuSWRld05XTEpNTzl1eVFKdHo1cHVEd3FfTXk5azVOcFB6U3czcWFmY3VnLXh0OTlOSUFCNXBxYmpGV2lVQllQZ0x5QUdKbElHbWg3aFh1NDNlRzVn?oc=5" target="_blank">Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution</a>  <font color="#6f6f6f">Nature</font>

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Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome
Naturetech

Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFB2R3piN2pNNXkzMEdSS1VOVW1BUWF3LVZQTzZhQkd2LUc4VUZ0cmlkSENDWUR2MENJNGRjM0tIQ3MyS3FKNWx5RjJoaVFYTXZXTHpKX0VyMW9Ib193dmhn?oc=5" target="_blank">Strain-level characterization of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome</a>  <font color="#6f6f6f">Nature</font>

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Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach
Naturetech

Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBWV1o0X3ZMMkdQN0FzTy1oTlI2a2N6LWw1TmZiaEhmeG9NTVR5Q3hDS0t2N3hHUlFhVHNwYW92ZFZVa25VdVJBR2F1YVBmRFRjZ1BQSENwNk0waUIxdElF?oc=5" target="_blank">Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach</a>  <font color="#6f6f6f">Nature</font>

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Gut microbiome strain-sharing within isolated village social networks
Naturetech

Gut microbiome strain-sharing within isolated village social networks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE92UnJrMkVJVnVqNU5ScEpkNFhPUUNOZ28zZmZTNFA5dUN4U1VLRFktVXZ2NUYyZTFKWndvSnZQRVFlZFNjWE4zTlNWaEZBdjRJS2YyVEJiWTVuWmE3ay04?oc=5" target="_blank">Gut microbiome strain-sharing within isolated village social networks</a>  <font color="#6f6f6f">Nature</font>

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Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain
Naturetech

Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE41V19KRzlMQnRXR1VqNWtzVmtyOFdvSzNFSVJGRmZWTi1YV0hmZzIwTmZLR1dobGpueVpXckdUZU1FU0hBVFZoTzJVYUZORTlOaHBoTVBhX0Q5ZUN0MFhv?oc=5" target="_blank">Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain</a>  <font color="#6f6f6f">Nature</font>

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Short- and long-read metagenomics expand individualized structural variations in gut microbiomes
Naturegeneral

Short- and long-read metagenomics expand individualized structural variations in gut microbiomes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9hOEszMXVwemVlcEdtTFpTLVBnT3VVUGlvNG1iRlV6bzM1ZHdGTjBhMC13X1VtRzRiblpmVGh0RWVONkNDdUZpb21adkd2VUg2a3UzSEpjTzk3LTV3emRz?oc=5" target="_blank">Short- and long-read metagenomics expand individualized structural variations in gut microbiomes</a>  <font color="#6f6f6f">Nature</font>

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Common cervicovaginal sequencing methods result in discordant molecular diagnoses of bacterial vaginosis and reveal strain level effects of Gardnerella vaginalis
Naturetech

Common cervicovaginal sequencing methods result in discordant molecular diagnoses of bacterial vaginosis and reveal strain level effects of Gardnerella vaginalis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA0dFZ4bnc4cF83OFBIY0RpUzdlbHQ1VTdkdVRaOUZjNnNOMXRNNzdteVphUkZjNWcyRE01djQ4WWFoWmhPNGZ1cDRfSS1fVUk3bUIyZjljS1FHTG5NSTRZ?oc=5" target="_blank">Common cervicovaginal sequencing methods result in discordant molecular diagnoses of bacterial vaginosis and reveal strain level effects of Gardnerella vaginalis</a>  <font color="#6f6f6f">Nature</font>

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Challenges and opportunities of strain diversity in gut microbiome research
Frontierstech

Challenges and opportunities of strain diversity in gut microbiome research

<a href="https://news.google.com/rss/articles/CBMilAFBVV95cUxQeDQzaThnQkNrZXZ1QURRV3RucWREVHM5MmVsNHNNZWgwWFpXaTF0Q2hXU2xjNm5FZ1JnaURDLTZseDdROVVNTXNaM283WmxCN3pROHpvWVpvOW1XaXhvNzVOZUdSWVgzNkhidmx0VmplWENNUlMzM1dIaVNrcF9BcU9mb0hpQV8yeXZOZjd3Ni1uekFP?oc=5" target="_blank">Challenges and opportunities of strain diversity in gut microbiome research</a>  <font color="#6f6f6f">Frontiers</font>

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Strain profiling and epidemiology of bacterial species from metagenomic sequencing
Naturetech

Strain profiling and epidemiology of bacterial species from metagenomic sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5JdjJFakZVZXhqbHhpQU40QjRQNFM0cGFlRm1rQld6M2NFZWlhYlFUMFR6WXY1T2U3dkxfSjJQNEl6c25iaHdxT1ZNTEV4OFllYW13WUxISnVwaFp2U2Jj?oc=5" target="_blank">Strain profiling and epidemiology of bacterial species from metagenomic sequencing</a>  <font color="#6f6f6f">Nature</font>

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"Strain-level metagenomic" — Live Google News Trends & Headlines