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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Spatial transcriptomics r" (30 stories)

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PlantCellChat: an R‐based toolkit for predicting plant cell–cell communication from single‐cell and spatial transcriptomics
Lead StoryWiley Online Libraryworld
May 12

PlantCellChat: an R‐based toolkit for predicting plant cell–cell communication from single‐cell and spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiakFVX3lxTE50V1VvYVNibWxUUVVkZUtCVEdxalU3dkphOTdMOU9rMmMyd05EUUFfckk5N1FJUGhVbTJUc0dwZ3RrVWdUbXBFR19JZkZsbXRXTWhkZWd1clgtd3hHT2YxSFFONC1NZFdiVWc?oc=5" target="_blank">PlantCellChat: an R‐based toolkit for predicting plant cell–cell communication from single‐cell and spatial transcriptomics</a>  <font color="#6f6f6f">Wiley Online Library</font>

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Search Results for "Spatial transcriptomics r"

Updated every 3 minutes via FreeNewsApi, GNews, Currents API & Google News

29 stories displayed
Accurate imputation of pathway-specific gene expression in spatial transcriptomics with PASTA
Naturegeneral

Accurate imputation of pathway-specific gene expression in spatial transcriptomics with PASTA

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5FQm1hZ0lKMTZpSDV4VnpNZTUtV0Z2ZVZabTZNWjd3aklnSkVGeGRSSC1zNTRDMFpNYW1nNW9qZFJtd29yNXdwbEUwMWFoMGppWFZIQ0k5Qkd5STBBZUh3?oc=5" target="_blank">Accurate imputation of pathway-specific gene expression in spatial transcriptomics with PASTA</a>  <font color="#6f6f6f">Nature</font>

Embryo-scale, single-cell spatial transcriptomics
Science | AAASgeneral

Embryo-scale, single-cell spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiYEFVX3lxTE5QNy15MlhpN0NwUXlhcVdTYnJPeXNpY0dlX1RYMzd0VWYwOXVvYlV1eThXRlpwNjFSSWdwOHVwVHhNN3M1M3FXVDExMWFoRnhIaDJTSVJNZU1iUGU2R1pDdA?oc=5" target="_blank">Embryo-scale, single-cell spatial transcriptomics</a>  <font color="#6f6f6f">Science | AAAS</font>

Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem
Naturetech

Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9CLVFnaUY3Wk13X1UxcnpLeXd0WVYzbmUwZjgtWUVkcUc0ZHhhZEIweGlGNVdBY01KMjVHQlRVQk1vRWVVZ0tud1l1TzlGcGItTlJ0LUpsc2g2WVQyLWln?oc=5" target="_blank">Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem</a>  <font color="#6f6f6f">Nature</font>

Detecting significant expression patterns in single-cell and spatial transcriptomics with a flexible computational approach
Naturegeneral

Detecting significant expression patterns in single-cell and spatial transcriptomics with a flexible computational approach

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9TT0Nfc05LZXhHckJZX3pEaG0yMzloVHN0MlE4RnNTUmx2aDNGSnRabURuXzl6RmduRUdQTGlrVHk4dGZNdVBwLW9MUzd2N0hZTFg4RmctaWxhN0JiZTNv?oc=5" target="_blank">Detecting significant expression patterns in single-cell and spatial transcriptomics with a flexible computational approach</a>  <font color="#6f6f6f">Nature</font>

BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
Naturetech

BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE0zRTFpblUwTVZBal9yRGF2NFpnQ21BaFI4ei1TOWR2M3k3WmlqTnhtcER1N2ptdU8wUUZkYTFWRzR3MlV2Snc0Ry0yNG5GalprbW94QW9Zdi1icmQ0eVVJ?oc=5" target="_blank">BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis</a>  <font color="#6f6f6f">Nature</font>

A computational pipeline for spatial mechano-transcriptomics
Naturegeneral

A computational pipeline for spatial mechano-transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9KLU9JNEwwbWlIQVREcVZWQjBjNnlaU0xIMUNFNnJCU25QcmJ4b05oUnZrT0d4M0trZ1NBdlF5LWtkTnRvYi1RVTFacEYtT2V2RE81N1N4LUdKOWs5Ykdj?oc=5" target="_blank">A computational pipeline for spatial mechano-transcriptomics</a>  <font color="#6f6f6f">Nature</font>

Screening cell–cell communication in spatial transcriptomics via collective optimal transport
Natureworld

Screening cell–cell communication in spatial transcriptomics via collective optimal transport

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1lYXNaeWJMeDUwdTMtaVFMQkRnNjZtTmZxNW80c3I1elJyYTRMcDRhc0tBU29IQzZjVUJlbkJqX012TEtzRTZEQ3BFWVFCazh1R0pQNWFTZEpQNzJCRFlv?oc=5" target="_blank">Screening cell–cell communication in spatial transcriptomics via collective optimal transport</a>  <font color="#6f6f6f">Nature</font>

Thor: a platform for cell-level investigation of spatial transcriptomics and histology
Naturegeneral

Thor: a platform for cell-level investigation of spatial transcriptomics and histology

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9DUk5vclRLU3NkLVB4M21qLWZ1UUY4Vi1UbzVuZkd1UkpoRFV6ekJGV0VBRXMtdmQwYjA5eC0tQTI2eTBvLUkySDd6M1F6STFKWHh2azJERjRPelRza2Nz?oc=5" target="_blank">Thor: a platform for cell-level investigation of spatial transcriptomics and histology</a>  <font color="#6f6f6f">Nature</font>

Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology
Natureworld

Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE02ZFJwUFpvR3ZlTzVrbkRPTUVodURsVExoMEt2YnNiOVotT0RjMUlwal91S1VhVk1OQTRWVHljYi03NXJoSzI2Ui1fZDluWmpGZ0I2OTNsdmR6NGQzbzdR?oc=5" target="_blank">Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology</a>  <font color="#6f6f6f">Nature</font>

Characterizing cell-type spatial relationships across length scales in spatially resolved omics data
Naturegeneral

Characterizing cell-type spatial relationships across length scales in spatially resolved omics data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA5R2M4ZlNLSTlZNzd3LVA2cVB6YmtoY21Uc2oyMjRoRHJFME9pWGVtQXhZQkVJOVE1RlJ3Xy1TRjBsZHFWRnc2R2VyOFM2ckN3X3ZGdWk4ZkkyR1ZiaEFN?oc=5" target="_blank">Characterizing cell-type spatial relationships across length scales in spatially resolved omics data</a>  <font color="#6f6f6f">Nature</font>

SpotClean adjusts for spot swapping in spatial transcriptomics data
Naturegeneral

SpotClean adjusts for spot swapping in spatial transcriptomics data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBQZEpHd2UwQ2RSSl81WjBsRVdGWnNOSDlzVHdwUXRPN2t0WldLcE1fdi1hSUZrR3NOeHpZbjBzblVlMXFxQlJhQ0hreUk2OWE4MjhwUmlwTE1sMzRvcmJB?oc=5" target="_blank">SpotClean adjusts for spot swapping in spatial transcriptomics data</a>  <font color="#6f6f6f">Nature</font>

Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors
Naturegeneral

Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE42TDNmU21oMkZrdXRQbVBrSXlNM0hOanFLd0p3Q212NkJxcmVKX0xCR1U5SXBqbzJUd2ktbHp2OUFSbnRkdTlDVGVUbzdBVWh2aTU0X1BFdzVoMEdrVFc0?oc=5" target="_blank">Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors</a>  <font color="#6f6f6f">Nature</font>

SpatialData: an open and universal data framework for spatial omics
Natureworld

SpatialData: an open and universal data framework for spatial omics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA1UDI3d2g2WnAyVnZvUGM4SWt5VXF1Z1pSMjJrTkZlS3lkZjlkbUxvNUg5cVhMM0NGMWpnX3RNSTQ5QjVQQnBPS3VmNEg5Vnc1N1M4TTh6VU53eEFfUk9F?oc=5" target="_blank">SpatialData: an open and universal data framework for spatial omics</a>  <font color="#6f6f6f">Nature</font>

Identification and characterization of cell niches in tissue from spatial omics data at single-cell resolution
Naturegeneral

Identification and characterization of cell niches in tissue from spatial omics data at single-cell resolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1JMGpEVURWeHF5NDVqNE1SdkU5eHZqRVo4ZVUtMW1ka3d4T1I2anRLbVNaWklJc0tVV2dhUFhtelUzdHVzd1BQYTlCRlN1ZkJKNW9sUVVkeTVtNXQ0VXRv?oc=5" target="_blank">Identification and characterization of cell niches in tissue from spatial omics data at single-cell resolution</a>  <font color="#6f6f6f">Nature</font>

CytoSignal detects locations and dynamics of ligand–receptor signaling at cellular resolution from spatial transcriptomic data
Naturegeneral

CytoSignal detects locations and dynamics of ligand–receptor signaling at cellular resolution from spatial transcriptomic data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5zVnNZTEpibEN2UTlzUHpoc2hnSHYwSEVEQjVpOUN0eTNKbmFQY2djaUU4NmpqdmxYdHQwMGZGVE1UemdkN1cyQlNHUnZNdGZvaERKbGthWTl3NnhmUHpN?oc=5" target="_blank">CytoSignal detects locations and dynamics of ligand–receptor signaling at cellular resolution from spatial transcriptomic data</a>  <font color="#6f6f6f">Nature</font>

STAIG: Spatial transcriptomics analysis via image-aided graph contrastive learning for domain exploration and alignment-free integration
Naturetech

STAIG: Spatial transcriptomics analysis via image-aided graph contrastive learning for domain exploration and alignment-free integration

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1jZ2hNbkc4bXJMNFQ4TU5iczViUjNrMllVRGhEUG50VjJHandCRlRQSEoyQksxaGt3cW12SVFvT2M0X29QVk9vSWlTelFKRjZlSUx2UTM2TVJ1QTZhX3V3?oc=5" target="_blank">STAIG: Spatial transcriptomics analysis via image-aided graph contrastive learning for domain exploration and alignment-free integration</a>  <font color="#6f6f6f">Nature</font>

Differential gene expression analysis of spatial transcriptomic experiments using spatial mixed models
Naturegeneral

Differential gene expression analysis of spatial transcriptomic experiments using spatial mixed models

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBqRmxVYmJzcVo2aV9nUlp5dFltQndpalQweElHalNrNWFtSDZxTVdNNVRYek9uSGw5TW5jSmhqM2hjalNDRFRSZUtmSUtGNEZFNXYyOXQyc0FSYklDTnB3?oc=5" target="_blank">Differential gene expression analysis of spatial transcriptomic experiments using spatial mixed models</a>  <font color="#6f6f6f">Nature</font>

Spatial transcriptomics deconvolution at single-cell resolution using Redeconve
Naturegeneral

Spatial transcriptomics deconvolution at single-cell resolution using Redeconve

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBoaXRtOGlBMVR6VnBydlYtcEFYb1JJUEVrTWJDSkFiY1JOTnBuLUlIVF9FR1lGNmxsREFZVldnU21raW1JbUNZOTZadktjWTRvX2ppRjFDcVNhOXZqMHFv?oc=5" target="_blank">Spatial transcriptomics deconvolution at single-cell resolution using Redeconve</a>  <font color="#6f6f6f">Nature</font>

Multiscale topology classifies cells in subcellular spatial transcriptomics
Naturegeneral

Multiscale topology classifies cells in subcellular spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1tbWJ6bzlXNjJXNmdSUGFrWUNlSUpRcEVFUVl0OFludVFGNlFMN2lPV1M3MjIycGZYdmdkZzQwaHpBSVdsZHF0VWFRdHZySFlxVEVkSnpYNG5ZXy1EVmR3?oc=5" target="_blank">Multiscale topology classifies cells in subcellular spatial transcriptomics</a>  <font color="#6f6f6f">Nature</font>

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics
Naturegeneral

A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE90UTRBdk9JSWtsWGh3MmdBTTR3Tnd1ODF3QkRKa1lZSlh2N0NmbEdHMGZhZzhnVzl6Z3ZRZFV6Umo4R1lHQnkwOEhyUkxPYUJoZ2ctWi1NM0tHM002a2VV?oc=5" target="_blank">A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics</a>  <font color="#6f6f6f">Nature</font>

NeST: nested hierarchical structure identification in spatial transcriptomic data
Naturegeneral

NeST: nested hierarchical structure identification in spatial transcriptomic data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1hREd2VlNZRnFRNjdfVFR6WnhETW5RVlNGa1lES0llM1dBX1kxUEF1dnIxblB5UE9UMjhEUHMtUGh1bWprVWpMSGxFQ0hiWHRmeEF2ODEzTU1SNWpISmlj?oc=5" target="_blank">NeST: nested hierarchical structure identification in spatial transcriptomic data</a>  <font color="#6f6f6f">Nature</font>

Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues
Naturegeneral

Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE43OXBYT0ZwZ3NNTkdUYmVDc2ZCV1hPSzJUeWk2VFJrb21mcjlGN2ZnUkFtNDVTVWo1SnpMaHZfSUxJaG5qLVA5LXZ0VTBxOWlvU0pLMHZpYVUzZnp4cXBv?oc=5" target="_blank">Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues</a>  <font color="#6f6f6f">Nature</font>

Estimation of cell lineages in tumors from spatial transcriptomics data
Naturegeneral

Estimation of cell lineages in tumors from spatial transcriptomics data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9MV1IzaTRUSnQxYjhLcjFOTzRFUkdqVmduX29yZk04QmtyT0tJX09yUWJJRHhVMzZlRzRzT1I5NkJqVEkzZnBYTUJsa19KT2VJakw3ZjR6U09CU2dic3Vn?oc=5" target="_blank">Estimation of cell lineages in tumors from spatial transcriptomics data</a>  <font color="#6f6f6f">Nature</font>

Squidpy: a scalable framework for spatial omics analysis
Naturegeneral

Squidpy: a scalable framework for spatial omics analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5yUGdPY3ZIajBFOEwzWHR6YkJTSDJJMUhfQWNaUnF5VV9qRG90VmFJMjNzYk91RnlqcmNwakZBX0lWdjl1SmFTUERDaFc4OHhMQk1zQXdTN3lrRWl2MkdJ?oc=5" target="_blank">Squidpy: a scalable framework for spatial omics analysis</a>  <font color="#6f6f6f">Nature</font>

Predictive and robust gene selection for spatial transcriptomics
Naturepolitics

Predictive and robust gene selection for spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5lcEFIUEdWNkR5VGFhT1R3VDdvZE9HRnJUZ1p1VHlWQzd3OTRkbmx2ZTB1ZnpOVHV6M2Y5QkZGV2tHVE1YYWM4QWppc2duaTJvUXlPZXR2a2J5dmI2SUpN?oc=5" target="_blank">Predictive and robust gene selection for spatial transcriptomics</a>  <font color="#6f6f6f">Nature</font>

Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis
Natureworld

Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5nUk9CV0hXLU1HMGE1WVBNZnlZbm9sYTR3MVY4bG1tTHBXMnlwUllpcUJYVks5SHhRRFZoMy05bW92QXNwenB5bnljMmE4TVZHVFFtank3cUZjVFBSMWJz?oc=5" target="_blank">Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis</a>  <font color="#6f6f6f">Nature</font>

Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response
Naturegeneral

Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5EVG50SHJxRC1DdGN1Rm0yVzg2TFRuSTBUYTZDU19CanJFaWRsWEo2am1mNmtVTnBzcVBRc2M3aFhwSk9NLWRvT2VOSF9nVXBwajJjQnlJcWhXazktdmY4?oc=5" target="_blank">Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response</a>  <font color="#6f6f6f">Nature</font>

SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics
Naturetech

SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBubm1OX05VOHRkanlZaWFPYk5VMEhYMW0xaEU0Rm1ZYTVsVFducm5jSlg2QWJFS09ZSWhsTTdXXzd1RDhMOVdRaVNwVHllbGZlel9ndktVSGNydWJxQ3l3?oc=5" target="_blank">SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics</a>  <font color="#6f6f6f">Nature</font>

Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution
Naturescience

Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5IbDBwdnFGSzFfbzJRLXdiYlpDLU1yakxvVk9lTWNMTTdYbGphYlg5cGNtOWNlWGFSaldsNHJkYkI2ZGFoVDVYZDJtN2xJZzJKS0hRYUUzanR5ZmFSNWtz?oc=5" target="_blank">Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution</a>  <font color="#6f6f6f">Nature</font>

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