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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Protein language models e" (30 stories)

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An enzyme-specific protein language model for catalytic property prediction
Lead StoryNaturegeneral
Jul 17

An enzyme-specific protein language model for catalytic property prediction

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9ILUxvWEtrekxQVzJEdHR3YzVGYVFYd1FQSHp2SWlibUNvLWdWOGF6bzZ0TTgwV1p4N0lKLW9hRDA5NjhHMVJsbS00Nno2YkdzeGxia2FYbl9ZNGhuNkk0?oc=5" target="_blank">An enzyme-specific protein language model for catalytic property prediction</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Protein language models e"

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29 stories displayed
Rapid directed evolution guided by protein language models and epistatic interactions
Science | AAASgeneral

Rapid directed evolution guided by protein language models and epistatic interactions

<a href="https://news.google.com/rss/articles/CBMiYEFVX3lxTFBocHZMalZmd1dBOVJjYlVkMGZvbUxRQVBGdjIyVlVhVFlnZ0UtUFVKSFdYQVI1UzBvN1NQN2MxeUNNY1I3RFdiN2RyTlRCUTd5SnBiRGhSRlFQSnZZMlFRRA?oc=5" target="_blank">Rapid directed evolution guided by protein language models and epistatic interactions</a>  <font color="#6f6f6f">Science | AAAS</font>

Unsupervised discovery of functional sequence patterns from protein language model with MotifAE
Natureworld

Unsupervised discovery of functional sequence patterns from protein language model with MotifAE

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA2a3ZyTEdiS2pLZVFPTktVZEd5bUR3SFJYTGJETkRqLVdDcGp4Vm1fdTAzSWhxOU0zcXZpdUdOS3h2ZlRPcWZfclNwR0lRcnQ3eFhONjR0UlpDY0tZcXd3?oc=5" target="_blank">Unsupervised discovery of functional sequence patterns from protein language model with MotifAE</a>  <font color="#6f6f6f">Nature</font>

caRBP-Pred: Leveraging Protein Language Models for the Prediction of Chromatin-Associated RNA-Binding Proteins
Science Partner Journalsgeneral

caRBP-Pred: Leveraging Protein Language Models for the Prediction of Chromatin-Associated RNA-Binding Proteins

<a href="https://news.google.com/rss/articles/CBMiWkFVX3lxTFBEbnViMVkzXzhmTU1yWC02Z2tIRVlJNzZMOUVPNFljejVPS1RTbTFDbWk1QWFqcDk0XzlzSkJLZ1RoaUdCVVV2S0E3dWF5LUJ3dmVHdXg5bERydw?oc=5" target="_blank">caRBP-Pred: Leveraging Protein Language Models for the Prediction of Chromatin-Associated RNA-Binding Proteins</a>  <font color="#6f6f6f">Science Partner Journals</font>

Democratizing protein language models with parameter-efficient fine-tuning
PNASworld

Democratizing protein language models with parameter-efficient fine-tuning

<a href="https://news.google.com/rss/articles/CBMiXEFVX3lxTE8yNzB2enZRdVV1RG1WY2VITzVhNTY4VWl0VHpOVXRkVVFxYVRDczVRUG1DZmx0Yi1tQmVpb3hsb3BqWFJzMFMwc2UtRlVkRmxzbmN3SFpPR193UVUy?oc=5" target="_blank">Democratizing protein language models with parameter-efficient fine-tuning</a>  <font color="#6f6f6f">PNAS</font>

MIT Mined Bacteria for the Next CRISPR—and Found Hundreds of Potential New Tools
SingularityHubworld

MIT Mined Bacteria for the Next CRISPR—and Found Hundreds of Potential New Tools

<a href="https://news.google.com/rss/articles/CBMiuwFBVV95cUxNd0ZhRmZZOUFrVk94bkFHQXdhUW5DLUZPOXJ0bGxuOVQ1eF9vUmszRjBnU3JOcnFHS29hY1lFLXJGLVpXM3RsRUZTa0JvRHVZLVR6MFlmdzBlc0l1d2FMbWtMd1BsMnVDMjhES0hkTHpxY3p0OW5SMlUzdDY4UjYtaUk0WENyZU5pbjlHVmNPVm1hamNHVXlKNFNhbWdVbUtrdG95aDBPRHhwN3dUZ3NDaVctT2IxaGR6a3dz?oc=5" target="_blank">MIT Mined Bacteria for the Next CRISPR—and Found Hundreds of Potential New Tools</a>  <font color="#6f6f6f">SingularityHub</font>

Compressing the collective knowledge of ESM into a single protein language model
Naturegeneral

Compressing the collective knowledge of ESM into a single protein language model

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBWTGZOOEpGUEJNUXZ0bkxXTmF1a3U5YmNDdzNqcE83U2gxT1g2a3ltV1lsaVV1cVVrdlN0bWRPeFFzM1FyRWtQMVJ5aTNac04wSFJ6N2hfRGoxLUZSZG1V?oc=5" target="_blank">Compressing the collective knowledge of ESM into a single protein language model</a>  <font color="#6f6f6f">Nature</font>

eSIG-Net: an interaction language model that decodes the protein code of single mutations
Naturegeneral

eSIG-Net: an interaction language model that decodes the protein code of single mutations

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBvazljUFRiTEZmakVCRFU3MXNzQmZZTW5keWRJaDlueEt0YUdGcGhYSU9SMnh3ZHNaUmh0bm9VNTVzdDNJRzJreGcyNFI5N052XzViTmJCVW5BUnNRMFNF?oc=5" target="_blank">eSIG-Net: an interaction language model that decodes the protein code of single mutations</a>  <font color="#6f6f6f">Nature</font>

Aligning protein-generative models to experimental fitness with ProteinDPO
Naturegeneral

Aligning protein-generative models to experimental fitness with ProteinDPO

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1pcDhuY2N0Y0dNUktSdkZBMzF0WHVDSmt5MFlYSlBTU2FXNVFDb2pJWjBTMHc4SnozbHJDbm5qUTZMb2lrVkdzcE5hRmtQc0JLTGxZMDdLUUhRYkdLMWhN?oc=5" target="_blank">Aligning protein-generative models to experimental fitness with ProteinDPO</a>  <font color="#6f6f6f">Nature</font>

Data-driven classification of Escherichia coli using protein language model ascertains O-serotype determining genes
Naturetech

Data-driven classification of Escherichia coli using protein language model ascertains O-serotype determining genes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5kazNhNUZsMlZnbV90WG1fSVI3Tmd4UTF4VWxmUVBqUTlwY182UFpPekV1bWZaUjFkaV9YZzg0eGQ0VGNScUctQzNlQzZvTloxczBYRWdBdVhUQnlVN3E4?oc=5" target="_blank">Data-driven classification of Escherichia coli using protein language model ascertains O-serotype determining genes</a>  <font color="#6f6f6f">Nature</font>

Transfer learning on protein language models improves antimicrobial peptide classification
Naturegeneral

Transfer learning on protein language models improves antimicrobial peptide classification

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1UZTF0d2s2MjdNaGtud0JkTjZFOFdsS09iT2JuYU56MHZhcVN0TEdxQnlxZjh6N2pRNmU4MVJkMENGc0I2ZGQtZ3pSaXJ4bW1RUmZlcWdqQTg1TXZEc2ZJ?oc=5" target="_blank">Transfer learning on protein language models improves antimicrobial peptide classification</a>  <font color="#6f6f6f">Nature</font>

PLM-interact: extending protein language models to predict protein-protein interactions
Naturegeneral

PLM-interact: extending protein language models to predict protein-protein interactions

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE51UTNYODRxMlZubzRwbEZKbEE5SzNtaGlKQi1VTWxuWE1uMVpmckxySm9UVXBlUkRTMmk1aHl3RHJDeHJ6UTFjS1JUTG5zcDBFUUFLU2ZDWFBVdXRKeFVZ?oc=5" target="_blank">PLM-interact: extending protein language models to predict protein-protein interactions</a>  <font color="#6f6f6f">Nature</font>

Generalizable and scalable protein stability prediction with rewired protein generative models
Naturegeneral

Generalizable and scalable protein stability prediction with rewired protein generative models

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5aZW95S1VwM2haaHo5VTZKVXBoSTNZXzBiVjhTOW9kUDZFOGNITHVMRDA3YWVMYm03Rkp4WG5VUENfYVhTU2gyWUNOR19iNDN1LXlQVXRFcjNEUWNCRFBR?oc=5" target="_blank">Generalizable and scalable protein stability prediction with rewired protein generative models</a>  <font color="#6f6f6f">Nature</font>

Protein Set Transformer: a protein-based genome language model to power high-diversity viromics
Naturegeneral

Protein Set Transformer: a protein-based genome language model to power high-diversity viromics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1fenI3UHZwenBXNVNFVmotWlBsTUxNUzZPdW1nQlNTYUhieldFdmMwSjQ1WEppa3Z2WkNvNk9BYmtFRFRpWVZPdTVjUUo5N1EtRDFCLVR1c2RlZFBoMUhJ?oc=5" target="_blank">Protein Set Transformer: a protein-based genome language model to power high-diversity viromics</a>  <font color="#6f6f6f">Nature</font>

Semantic design of functional de novo genes from a genomic language model
Natureworld

Semantic design of functional de novo genes from a genomic language model

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9oUjF0Vk9DdHpfX2ZkcEdlLVdhMHNqU2JCOURialdmVXFHRUZSVXRWcVNkbHpBMjZNUVcwaEdWbDF4N1dNNGpKSWw0TGJhNk1zYnZ0eFUwdm9ZazBvcG5Z?oc=5" target="_blank">Semantic design of functional de novo genes from a genomic language model</a>  <font color="#6f6f6f">Nature</font>

Biophysics-based protein language models for protein engineering
Naturegeneral

Biophysics-based protein language models for protein engineering

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE12aDMtMGJVX2dBMXpzUTFHVHhMdE5tcVdiSTdRVFZ1Y2FpakVSX0tDV0lEOVgtVFY0T0NCaV9sb1NKZ21qbF9VNkgyYU4wNkVLLUdCNHpyWm5pUEVhTEtr?oc=5" target="_blank">Biophysics-based protein language models for protein engineering</a>  <font color="#6f6f6f">Nature</font>

Fine-tuning protein language models boosts predictions across diverse tasks
Natureworld

Fine-tuning protein language models boosts predictions across diverse tasks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1SRHF4Q25kbXkwNFhMQ2J6anhmRGpweWs4ZE1GRkVhWmpyblpmVmd3ODNQektwVTdQTEJSdWdDSmNzNkZ3VWl3am5jYkZNTWZvVVdrRzRYTlNjd1dnYTRj?oc=5" target="_blank">Fine-tuning protein language models boosts predictions across diverse tasks</a>  <font color="#6f6f6f">Nature</font>

Enhancing efficiency of protein language models with minimal wet-lab data through few-shot learning
Naturegeneral

Enhancing efficiency of protein language models with minimal wet-lab data through few-shot learning

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBiLURtVG9PWEpDM2IxRUxnMjBUWEs1SUtKclA5ek5rUTBaZHpMbzVuanpYTTJwOVl0RTFCUkRIU2FaNWp1YmNTUXR1V0dURU5jUWhDM1BaVS04VVNDa1h3?oc=5" target="_blank">Enhancing efficiency of protein language models with minimal wet-lab data through few-shot learning</a>  <font color="#6f6f6f">Nature</font>

Efficient evolution of human antibodies from general protein language models
Naturegeneral

Efficient evolution of human antibodies from general protein language models

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE11V1RGQnpSeHpPU1kyRDVtODJDUHBXNU92ZUY2ZmE0UEthemlpcnZKV2ZpZDFOSFB6QU52NEhtaWJYaVRvRUZsb2NjT0RONVZoQUt3ZWx4b2ZNdUh2MGRB?oc=5" target="_blank">Efficient evolution of human antibodies from general protein language models</a>  <font color="#6f6f6f">Nature</font>

Benchmarking protein language models for protein crystallization
Naturegeneral

Benchmarking protein language models for protein crystallization

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5zaXFtX2FLM1o0ZnBTVFNmRXQ1TUdFSzFyU3FNVjZMYXctY0VVNEZSN1ozNm0zUVNCNGNlLTMtbXlKLXdzS2Zmc3BqT01jWlpKQXpCeHlwdHN6TUVGWjhB?oc=5" target="_blank">Benchmarking protein language models for protein crystallization</a>  <font color="#6f6f6f">Nature</font>

Language models reveal a complex sequence basis for adaptive convergent evolution of protein functions
PNASworld

Language models reveal a complex sequence basis for adaptive convergent evolution of protein functions

<a href="https://news.google.com/rss/articles/CBMiXEFVX3lxTE5tQm9WQWlHcmFlU1dpVk9JM21RQi1panpMUEJQWkZNMUhnMjE5TnFaOGJIZEgyekxnV2NwcHJWZzFwSnQwblJLNTM3RXBfMWhpV2tjeDBCcUlUZTdZ?oc=5" target="_blank">Language models reveal a complex sequence basis for adaptive convergent evolution of protein functions</a>  <font color="#6f6f6f">PNAS</font>

Integrating protein language models and automatic biofoundry for enhanced protein evolution
Natureworld

Integrating protein language models and automatic biofoundry for enhanced protein evolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBMUjhCUzA4ZEF6NVdZZDk1NV9aeTFKZVN5YmlNcGpSamsxa0lpejhJNG9hOEV0cFJCOGZkc1E5QlE5dW42cU9tRVNsUDJuZUFlSklVTG1FTmhaeHRycWpv?oc=5" target="_blank">Integrating protein language models and automatic biofoundry for enhanced protein evolution</a>  <font color="#6f6f6f">Nature</font>

Single-sequence protein structure prediction by integrating protein language models
PNASgeneral

Single-sequence protein structure prediction by integrating protein language models

<a href="https://news.google.com/rss/articles/CBMiXEFVX3lxTE1NQzc2TXljT3VBQlJKUGEwSDBZU0E2aHBFbC1GNVlfQjR6OTR1dzRWdVJ5UHMxX0hVNHJXTVp0Sm1waWEzRWU5SDNfN2lmQmhqdU5qeTlSbDdIWURw?oc=5" target="_blank">Single-sequence protein structure prediction by integrating protein language models</a>  <font color="#6f6f6f">PNAS</font>

Integration of pre-trained protein language models into geometric deep learning networks
Naturetech

Integration of pre-trained protein language models into geometric deep learning networks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9PcUppTDRWWlY2TjFQZURJaFlpaW05d2g3RExTYXRiTnNUSTg4cFA5Z016QUU1djlOd0VmSEZXSmY3VkU4anBQY3FpUnY4cmR3emZXQUNNU2FfWEV0LWdj?oc=5" target="_blank">Integration of pre-trained protein language models into geometric deep learning networks</a>  <font color="#6f6f6f">Nature</font>

Quantifying uncertainty in protein representations across models and tasks
Naturetech

Quantifying uncertainty in protein representations across models and tasks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1sdWpnWGxZRE50QzN0SmZjX0E5WGVES1J0MnJpY2NDc2JzdlBsSGNIRTM0aEN4V29VWTNhWjFYQU1LUlN3blhXaDVtZlVneldlVnNKVTM0anhBLXZZYlZn?oc=5" target="_blank">Quantifying uncertainty in protein representations across models and tasks</a>  <font color="#6f6f6f">Nature</font>

Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning | Proceedings of the AAAI Conference on Artificial Intelligence
The Association for the Advancement of Artificial Intelligencetech

Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning | Proceedings of the AAAI Conference on Artificial Intelligence

<a href="https://news.google.com/rss/articles/CBMiZEFVX3lxTFBBMHYwa3BoUGQtZDhGeXc0cDUtMjdDblp4R1ZtVVYzdGtpeFpScHZlcmZNNmRIdTlVUEJMcFZaaC1XZU9VcTZ3bi1nTVVCaDFjS3NfUEhhTGRLQU5OSXhMaF90NXM?oc=5" target="_blank">Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning | Proceedings of the AAAI Conference on Artificial Intelligence</a>  <font color="#6f6f6f">The Association for the Advancement of Artificial Intelligence</font>

Customizing CRISPR–Cas PAM specificity with protein language models
Naturegeneral

Customizing CRISPR–Cas PAM specificity with protein language models

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9oOFY3RjFUUzluOUVGSVN1WThYbmxqOXhmZlJJY2M2cHNLLU9RTFJlYTJOZ2hmYmtkdGp1RHBPWWNIYTRMUkZGUi11d2dFYVlQMmpoNEwtcHZIZTdxWGtN?oc=5" target="_blank">Customizing CRISPR–Cas PAM specificity with protein language models</a>  <font color="#6f6f6f">Nature</font>

Medium-sized protein language models perform well at transfer learning on realistic datasets
Naturegeneral

Medium-sized protein language models perform well at transfer learning on realistic datasets

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9EcU1ZZjZjdERnVlo4V01Rcng2UlVzd2Zac1RreDFyQkVNeFdTVGo1QVgxdzhObnZzbW44OGt6dUxpY3VmNl9wV2lIbHpqaWRDUVdaOXd6V1AtWm1CZWQ4?oc=5" target="_blank">Medium-sized protein language models perform well at transfer learning on realistic datasets</a>  <font color="#6f6f6f">Nature</font>

Assessing the role of evolutionary information for enhancing protein language model embeddings | Scientific Reports
Naturegeneral

Assessing the role of evolutionary information for enhancing protein language model embeddings | Scientific Reports

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9sLWpHU2x6SDlYeHFkajVpYVI5VlJFVlRoSmxfWVpmZGFBUksxcW02VlRfWFBDZnptMUxPRVR4aVhrZGNJcGRfUWdDX1c1ZW9UODhMaTAwNll1QjlnRVlz?oc=5" target="_blank">Assessing the role of evolutionary information for enhancing protein language model embeddings | Scientific Reports</a>  <font color="#6f6f6f">Nature</font>

A survey on large language models in biology and chemistry | Experimental & Molecular Medicine
Naturegeneral

A survey on large language models in biology and chemistry | Experimental & Molecular Medicine

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1kOUp2NXpDN0hLY29uY1Q0V3pzemhiVlFUODUtcmI2ODVqU01HbG12UTVfdjhabGVXLUZueEs0cWdiNG5uMVZmejg1R1U0RDcwSDQwTmR4WklVblZDV0pn?oc=5" target="_blank">A survey on large language models in biology and chemistry | Experimental & Molecular Medicine</a>  <font color="#6f6f6f">Nature</font>

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