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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Pan-genome-scale metaboli" (30 stories)

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High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T | Scientific Data
Lead StoryNaturegeneral
Jun 1

High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T | Scientific Data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBQTlFiZ3pyNkVxOFZoLW1RaTMxY0lLWTNoZzFfS2ppV2hSSEZDdDlTQWh3WlIxMVJORzdfQXo0ajhWZmJvcTQxQUlMdE1SRVJJR2pFM3RNRzJsTERCSDJZ?oc=5" target="_blank">High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T | Scientific Data</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Pan-genome-scale metaboli"

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Predicting Strain-Specific Metabolic Capabilities in the Genus Pseudomonas with a Flux-to-AI Approach Reveals Hidden Cell Envelope Properties
Science Partner Journalstech

Predicting Strain-Specific Metabolic Capabilities in the Genus Pseudomonas with a Flux-to-AI Approach Reveals Hidden Cell Envelope Properties

<a href="https://news.google.com/rss/articles/CBMiWkFVX3lxTE1teE00YXd4NWVlMHY4UFRSUFdEOGZtQ05BR2M2OGFFdElWZFlTWlltNFVHZVN0SmpXN25Zd2FrbjE1aW9CTUJORkMxZUlSTTYxSjJZSnJhRjVEQQ?oc=5" target="_blank">Predicting Strain-Specific Metabolic Capabilities in the Genus Pseudomonas with a Flux-to-AI Approach Reveals Hidden Cell Envelope Properties</a>  <font color="#6f6f6f">Science Partner Journals</font>

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Comparative genomics of Nocardia seriolae reveals a conserved metabolic core and extensive accessory genome plasticity
Frontiersgeneral

Comparative genomics of Nocardia seriolae reveals a conserved metabolic core and extensive accessory genome plasticity

<a href="https://news.google.com/rss/articles/CBMilAFBVV95cUxPUTU4U0ZmOGhVeWllTVVsam80WlM4LVFOMllQRTRWRGlTcXJEQnBLVU5JNjMtbDl0Sy02QTBzZlZwM2NGMGE3dHRXdVdQOFRmRTlfb3ZvOGU4NVRMRmp4RDQ3Y3hPWGhoTUs0bHRKRDZfQmxwNnVGVXhQNmlWakI0cjJONzVKcjM0aVU4NVQzWm85UDJN?oc=5" target="_blank">Comparative genomics of Nocardia seriolae reveals a conserved metabolic core and extensive accessory genome plasticity</a>  <font color="#6f6f6f">Frontiers</font>

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Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups
ASM Journalsworld

Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups

<a href="https://news.google.com/rss/articles/CBMiZEFVX3lxTFBZWGVvajcyNk1MNk9HbXk1cW03N20tWmYzbE1ROEFpNHI4MDVtbUN4RjU0VUd4Q1lMSWpxQ0dtbzllNUxjbm1zT2RYV0FpWWNhZEZnZFdQT2N6Y3lyMndRTXRrT3g?oc=5" target="_blank">Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups</a>  <font color="#6f6f6f">ASM Journals</font>

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A syntenic pangenome of Gardnerella reveals novel plasmids and phage, taxonomic boundaries, and species-level stratification of metabolic and virulence potential
Natureworld

A syntenic pangenome of Gardnerella reveals novel plasmids and phage, taxonomic boundaries, and species-level stratification of metabolic and virulence potential

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE92bS1oYXhmRGwxVUlyRkFrdnZ3ak1OZ0xER295Wm43WjhzOWxHaVdTYS1BcFZCRmJhRFFqWThxNl9BOUFDVEp6QXlmUzFJalFyYjdtR3FkQkc5YklpcWZV?oc=5" target="_blank">A syntenic pangenome of Gardnerella reveals novel plasmids and phage, taxonomic boundaries, and species-level stratification of metabolic and virulence potential</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
PNAStech

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments

<a href="https://news.google.com/rss/articles/CBMiXEFVX3lxTE1mcWNFWFRSODd5ZHVVaVZLSlExX3g1U2lRSHZMNlR1c2lGVFBSWnZGUjl1ZTlOMTIzS3lzQWhlT1lmeEVOVkZmclZNMUJuM1F1aHhJZjUydG5GcFZa?oc=5" target="_blank">Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments</a>  <font color="#6f6f6f">PNAS</font>

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Large-scale multi-omics profiling reveals environmental and evolutionary drivers of fungal phylogeographic and metabolic diversity
Natureworld

Large-scale multi-omics profiling reveals environmental and evolutionary drivers of fungal phylogeographic and metabolic diversity

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE50dUJhSGxBdzdyOW9MVDRBUjFhYVY2RWtySmFUaE5KQktsenVyV2VOZzN6TzQzdXFad1ZPYVowZ2M1V2hQek1YX2VkNl8wamJVdlpvNzVtVElnakdUa2F3?oc=5" target="_blank">Large-scale multi-omics profiling reveals environmental and evolutionary drivers of fungal phylogeographic and metabolic diversity</a>  <font color="#6f6f6f">Nature</font>

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Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology
Science | AAASgeneral

Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE4tc1p2WVJBX0pUS3dld3FRVms2Z19LT3A1WW5Ib0FsaTdhVE15TS15OEdZSF80X1lCUXhhRG5BMEo2bUd4ODk5Nm52QjBNT3FUMWlGWXgwSnNWNnhaMWNv?oc=5" target="_blank">Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology</a>  <font color="#6f6f6f">Science | AAAS</font>

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Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation
Frontiersgeneral

Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation

<a href="https://news.google.com/rss/articles/CBMikgFBVV95cUxNY2oyT3hObUR3UUx6YnVPZWt0UmtvZjlaOTF0ZWhhdkQzeFhlcGk4UGJlbG5RZVJzUTlJTkRkdUpoVXBBNlhTTm5xbXJiYXdIS1lWc1JPMFpoNVlhVGRwaFRoLUFoU1ZMUzlsUHVUbU85dHpyU3lsNWFhNTdpVXJRbHJrUGg2d09zODB5TklFWEE5UQ?oc=5" target="_blank">Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation</a>  <font color="#6f6f6f">Frontiers</font>

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Comparative genomics of Brucella species reveals key determinants of secondary metabolism, antimicrobial resistance, and virulence
Naturegeneral

Comparative genomics of Brucella species reveals key determinants of secondary metabolism, antimicrobial resistance, and virulence

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9rWEM0YmJSaF9kMmlsdzRZT25rUkxmN2kwMEVIeUtpRGRpWFBFeWt5emxMUXl0OGl2RE5UTkFOa0d1NVZLMzlEZ241NEFnYURUUk9Na3N0NHdOZ1U3OFU0?oc=5" target="_blank">Comparative genomics of Brucella species reveals key determinants of secondary metabolism, antimicrobial resistance, and virulence</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome
Naturetech

Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9IR2wxUUZkT2lCTEN5eTYtNWl3LXRUMnB6Z1ItYmRrVUliUkFOSGlXTUljZFJWTzFlYnpWSHdKelM2ZTdKV1VmN3MydDhYRkJEVUNIZ05NWldYOVdfam0w?oc=5" target="_blank">Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
Naturetech

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9vVllsYzNZaHU3U1B2Z3JpYXRjcHNNNUp2bXkzdHExWjFLRkVWbGJySk1TbEZMMm41d1lhQUI3WE9GLUZYMTBmMkJVM21Na0FYTk5POXhZOGdudGNaRFVn?oc=5" target="_blank">Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
Naturegeneral

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBzRktaVDJTXzNtU2Z1MmE3a19Idkpzd0FOTk04dEJMNEFycURtWk5FdW85MzhKUlRDWGJQMHQ4OFowVU1oLUZiUXU2SFhWZ2QyclF5U1NoNU9acExndm5n?oc=5" target="_blank">Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine</a>  <font color="#6f6f6f">Nature</font>

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AlphaGEM enables precise genome-scale metabolic modelling by integrating protein structure alignment with deep-learning-based dark metabolism mining
Naturegeneral

AlphaGEM enables precise genome-scale metabolic modelling by integrating protein structure alignment with deep-learning-based dark metabolism mining

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE84S0NHcTRzM2pFMGthdTZOM1l1ZTNuYXZHZnNlbEZuR2VRMmN4M0Z6OUhJeHU2LTZ4TjZhTFQ4YTMzMThzc0xENElpdm51cVBjNlJJRmEzY3JlWTZOV0t3?oc=5" target="_blank">AlphaGEM enables precise genome-scale metabolic modelling by integrating protein structure alignment with deep-learning-based dark metabolism mining</a>  <font color="#6f6f6f">Nature</font>

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Gene-level analysis of core carbohydrate metabolism across the Enterobacteriaceae pan-genome
Naturegeneral

Gene-level analysis of core carbohydrate metabolism across the Enterobacteriaceae pan-genome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE0zMTRBc29GR0o4NUl2ak13eTBGMlFTTnVVOV9OS0xNSnc4TXBmbmRyTmxLUDQ2NExyblRDeUFiSjJwdlRyZ2s4cVJmQl9JckxRaFdxZDRIVnJBaERrQ2JV?oc=5" target="_blank">Gene-level analysis of core carbohydrate metabolism across the Enterobacteriaceae pan-genome</a>  <font color="#6f6f6f">Nature</font>

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Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Naturetech

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1RYngzOWJ4TlE0RWRIYnRtM2Zaemh3SUYxdjNtalViM1NVaXFLS2ZSUlg5LV82M3FxdktKNURJNXh0SHZRWkdyeHpad3NKdnFDYVNPSkZjdTllYk4wd3pJ?oc=5" target="_blank">Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0</a>  <font color="#6f6f6f">Nature</font>

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Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning
Naturegeneral

Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBxVjEzcVBzYnRLUjZod1N1cXViSUtqWUk4dmZWZ01tLWZENGZVUUpkSC1ySWh6Tm1XNXdUYVBDOFZDdkgwaWxNVnhWTnRoZ2c5Ty1kNC1XS3JnWk94aTIw?oc=5" target="_blank">Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning</a>  <font color="#6f6f6f">Nature</font>

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Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance
Naturegeneral

Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFB0MGN4UFJBTTh5MkVIcXU3QXYyR2xmQ2JZa2hXZUlFNk5hd0M2TngyNnR3TnVOcDdsVVAwNWdCVi1WRlF4OG1lMW1QVU0tY1M3ek5qQUhPbWF4THhXRDJz?oc=5" target="_blank">Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance</a>  <font color="#6f6f6f">Nature</font>

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Linking prokaryotic genome size variation to metabolic potential and environment
Naturegeneral

Linking prokaryotic genome size variation to metabolic potential and environment

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBreXpVaklRMHJzajhyYURTUlBQRkNPZ0J5Ym1VZm9SR0d2S0lHSUdiT19meko0X0RIVDZhY2FiWFVxSUJYbGJLNDJMU2ctVlNqYk5EMXZlZVRnVzdQd3o4?oc=5" target="_blank">Linking prokaryotic genome size variation to metabolic potential and environment</a>  <font color="#6f6f6f">Nature</font>

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Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
Naturetech

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

<a href="https://news.google.com/rss/articles/CBMiU0FVX3lxTFBGLTBNTFd1WW1kRGU0T1l4ems2b3R0YU9qNU53NzFyeWRjMnZEaUdoNzhWMjVFdzJFR0h2eS1BN0FTNW0ybnBmcE84WmJENnl5dGNZ?oc=5" target="_blank">Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium
Naturegeneral

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBMWmlySDlYVXpISDJfUzdHQkNBM0FKRDFEeG1nZGdvNjlZRmp0R21WS1F2bEZXcF9qbVROWVNPSFFDRHl5TE5OSGdLVzZybnpMNWVHd1FudTJYcEUwQmhN?oc=5" target="_blank">Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic network reconstruction analysis identifies bacterial vaginosis-associated metabolic interactions
Naturegeneral

Genome-scale metabolic network reconstruction analysis identifies bacterial vaginosis-associated metabolic interactions

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9DZjZyVjVkUmFLaFMzV1lnclJZcUhhX25TbzlDSnFMZEVIU3YzUDBGT2RaVkFndVpyaUxhbGY0Rm1yeGh5MEg1OFY2aVVyTFRsRFBZUVlUX0FtVnBQSm9N?oc=5" target="_blank">Genome-scale metabolic network reconstruction analysis identifies bacterial vaginosis-associated metabolic interactions</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale modeling identifies dynamic metabolic vulnerabilities during the epithelial to mesenchymal transition
Naturegeneral

Genome-scale modeling identifies dynamic metabolic vulnerabilities during the epithelial to mesenchymal transition

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE54OW9OSm9VeXRyR1pFSE1NT053cl9wTnJCUDNpQnRHYVRGTjFHa3FrQy0yQ05jTjFJWm9yWGRhNWwtRDB6T2d4VHlKVk9fTVphVUtYN3hjd0oxOGJabUo0?oc=5" target="_blank">Genome-scale modeling identifies dynamic metabolic vulnerabilities during the epithelial to mesenchymal transition</a>  <font color="#6f6f6f">Nature</font>

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Genome-scale metabolic modelling identifies vaginal microbiome members as potential probiotics
Naturegeneral

Genome-scale metabolic modelling identifies vaginal microbiome members as potential probiotics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5PLUt5YUx3aGc4ZnlBWUpVVFU5alRISmJ2YUZrZ014aC1wbTNqdEhhMGhSS1hVeDVhQzBFVE9SZGpnREI1UUUxWmdoTFpOUG1GQmtBWTg0NHI5TGZFVEpv?oc=5" target="_blank">Genome-scale metabolic modelling identifies vaginal microbiome members as potential probiotics</a>  <font color="#6f6f6f">Nature</font>

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Moving from genome-scale to community-scale metabolic models for the human gut microbiome
Natureworld

Moving from genome-scale to community-scale metabolic models for the human gut microbiome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBHUDM5cUtFdk9yTTNiNWRuQlBPRC1JRWNlb1NZbWozQmNXOThtQzRWZ0dJWG1rOFExbWR5VGxDTGlyTkRDbXlSWWI1WlRXNUYxa2NGd1lXeDBDbUdXQmYw?oc=5" target="_blank">Moving from genome-scale to community-scale metabolic models for the human gut microbiome</a>  <font color="#6f6f6f">Nature</font>

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Transcriptome-based biomarker prediction for Parkinson’s disease using genome-scale metabolic modeling
Naturegeneral

Transcriptome-based biomarker prediction for Parkinson’s disease using genome-scale metabolic modeling

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5LaG0wajQxTW5DQzhndGtHWmo0dXZmLVhheVFSUENkNnhLUElnbEVXNFhkLVRSM0VZekpVeVB4aXFBSVk1ZGtzem9BRFAtdTNqNFRMTGFyZWUyOGkxSno4?oc=5" target="_blank">Transcriptome-based biomarker prediction for Parkinson’s disease using genome-scale metabolic modeling</a>  <font color="#6f6f6f">Nature</font>

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A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics
Naturetech

A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE8tME14SVRyUUtXbkc2V2lBSnRuZEdzRVk2UUJ1YXhxQUx2a1YyR3p0cFpKY1J1QmlwaWU5dGV2RVBnb2NSTlJDcFZ2U3hDdnpkQ2lyOWpXSWRCOFF4dmRB?oc=5" target="_blank">A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics</a>  <font color="#6f6f6f">Nature</font>

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Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus
Naturetech

Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5uMHpGMXZSVC1NcFNIMXJmNVBTNUtpNTlUdnFYb2hOMjBjamgtbE5NV3hlMmNOT1paZ1hORG9uRXI5UGJlLS1pUnJYQmNMcHRMaXlnSlFJclBwelpHZUFZ?oc=5" target="_blank">Curating and comparing 114 strain-specific genome-scale metabolic models of Staphylococcus aureus</a>  <font color="#6f6f6f">Nature</font>

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Bayesian genome scale modelling identifies thermal determinants of yeast metabolism
Naturegeneral

Bayesian genome scale modelling identifies thermal determinants of yeast metabolism

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBKb1o0Q2ZBVldhclgtNktmdEFxdXZZWEZSNUJLdUVmSFRHcEpBZ3Rra3NmajdoQnJLb1IwTmdDRXFoRFppSm5WVWM4OHJCYzg3cUZIeGFpZWVrMEZOd05Z?oc=5" target="_blank">Bayesian genome scale modelling identifies thermal determinants of yeast metabolism</a>  <font color="#6f6f6f">Nature</font>

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Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine
Naturegeneral

Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9DODFzalNaUllPaWxRelk1NWxIdGc4QnY5UGxGdFNESDNqSWtyQ2RJTTNzMHhyMS10ZzVYNFFyalpPUVFLc0tWTmpFcElZTUpWUnVvcFJmZHc0b3lUQWpJ?oc=5" target="_blank">Genome-resolved metagenomics: a game changer for microbiome medicine | Experimental & Molecular Medicine</a>  <font color="#6f6f6f">Nature</font>

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