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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Long-read transcriptomics" (30 stories)

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NanoTS: a deep learning tool for accurate SNP calling in nanopore long-read transcriptome data
Lead StoryNaturegeneral
Sep 22

NanoTS: a deep learning tool for accurate SNP calling in nanopore long-read transcriptome data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9TWEFYSVpISldFSnBmZ3pfOGxUZ3ZCeVE1WFNKbGpYZzA5X1BEN0NpcTRjdC1KQmhiNzhMR3lLQ2dMUUxlTkZuSE82UjdJX0pLbTNneHlCWjJXT1dQRThZ?oc=5" target="_blank">NanoTS: a deep learning tool for accurate SNP calling in nanopore long-read transcriptome data</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Long-read transcriptomics"

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29 stories displayed
Long-Read RNA Sequencing Reveals Hidden Isoform Chaos That Gene-Level Cancer Studies Miss
Bioengineer.orggeneral

Long-Read RNA Sequencing Reveals Hidden Isoform Chaos That Gene-Level Cancer Studies Miss

<a href="https://news.google.com/rss/articles/CBMitAFBVV95cUxPQzRSLTRwdi0wWVZ6R2Z1UHNqVEJGakdxSVhmcGNBbkd4QVNmN3dIQWpZTDEzYVQ1RlBJRlo0SHJ6MV9nZWk1THc1Z1htV3VXZFNNOEJWdWJ5Z2s3a1g3b20tM2Jnc1hUWWRLYnNEVlF0dGJwQTNGS0VoTjhudjBCdWhPOFN5Z1BIeWNmcXJTUVdVb0JwQVIzdldIamg2RUhFNjVUX1VONUpuNFc0cWhLR3JwUzA?oc=5" target="_blank">Long-Read RNA Sequencing Reveals Hidden Isoform Chaos That Gene-Level Cancer Studies Miss</a>  <font color="#6f6f6f">Bioengineer.org</font>

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Long-Read Pan-Cancer Transcriptomics Unravel Distinct Alteration Trends Between Gene and Isoform Expression in Tumorigenesis
Wiley Online Libraryworld

Long-Read Pan-Cancer Transcriptomics Unravel Distinct Alteration Trends Between Gene and Isoform Expression in Tumorigenesis

<a href="https://news.google.com/rss/articles/CBMia0FVX3lxTE1pbldoeWtkWGFLUGQzdm16ZXNNby1pUTlHb1V0UDA0LTlFVHhVTjFTcHh2REVEWTFzU2VTVVQxSHppVXZlYmE3LU54Qm85MEhNYTBhbjVPS3dlWUlFcXN2OUNMNUx3WkR0Si1r?oc=5" target="_blank">Long-Read Pan-Cancer Transcriptomics Unravel Distinct Alteration Trends Between Gene and Isoform Expression in Tumorigenesis</a>  <font color="#6f6f6f">Wiley Online Library</font>

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Beyond counting: how single-cell long-read sequencing turns transcriptome complexity into precision targets
Frontiersworld

Beyond counting: how single-cell long-read sequencing turns transcriptome complexity into precision targets

<a href="https://news.google.com/rss/articles/CBMijgFBVV95cUxPMS1iWTRNMnBaLUVwMWR4VkpvYlBiTVVsaHhHWnA1c3VDMnFOWFV2QlJySmVkWDNOM2w3cmdGNDBUV1VqbWhMbl9fWW9STTZLVzJ1a1djWm1WZ253cnJlZFFFMGVIVHd4VnhzbjdqZnEzd0JkZVRIVUZ5Vm1xZ21FSjhUZWswMG5tbmt4cTFn?oc=5" target="_blank">Beyond counting: how single-cell long-read sequencing turns transcriptome complexity into precision targets</a>  <font color="#6f6f6f">Frontiers</font>

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Beyond the Bench: Advancing cancer transcriptomics with HiFi long-read RNA sequencing
PacBiogeneral

Beyond the Bench: Advancing cancer transcriptomics with HiFi long-read RNA sequencing

<a href="https://news.google.com/rss/articles/CBMisAFBVV95cUxOdDRMRlYzay1fVTFEQjc4MlhCSXdabDRMRGJsNlVJVXY2X05LWnhvWHlOSGtha0JKM2YxR1dUdm03WWhoTEE3dUZ6Q0d6cEFIbElkT1lFOGdSd2MzUjJJd2M0SUhHcjlhR3lCd1VBVHhxSDQ3YXZWWE1YamVjcC1Edk43aWRrWXdER3lCd1h4RGhzQ2s0ak1GSlkwb084LVlhNlpqZDJ6NGJLUV9IVmlMWg?oc=5" target="_blank">Beyond the Bench: Advancing cancer transcriptomics with HiFi long-read RNA sequencing</a>  <font color="#6f6f6f">PacBio</font>

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SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencing
Naturegeneral

SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1iRUFRY1B3anAyZ3hGdVZEQnQwbDJrN2NZZGpaTXlmSHJManFReFFLZjZPblhBR2w1dVV4LUwzc1VuQURSUUx6MkxudUEwNTBlcm84SkR4cnZaTndIblVn?oc=5" target="_blank">SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencing</a>  <font color="#6f6f6f">Nature</font>

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ArgenTag, PacBio Partner on Long-Read Single-Cell Transcriptomics
Genetic Engineering and Biotechnology Newsgeneral

ArgenTag, PacBio Partner on Long-Read Single-Cell Transcriptomics

<a href="https://news.google.com/rss/articles/CBMiqAFBVV95cUxQUDlMcVNSS203OTI2emJsQWkzQTlneWFQb1c1bzdmWG9SVmtzNW1qSndHbmRRLU9hOVV3VkNBV0RRbzdLclZyYUJQY1dwcUEtM0x4ZHRSOGNILUZYMkU4cTVEaXJKSDNzcEtfSVpvQXNBekpTTkZiVk9oeHkzR2VRUjRrazB0a2V0UHVva2h0amFlcng0VjFiRDdOd2VNejFDWEJmTlZZQUM?oc=5" target="_blank">ArgenTag, PacBio Partner on Long-Read Single-Cell Transcriptomics</a>  <font color="#6f6f6f">Genetic Engineering and Biotechnology News</font>

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Ancestry Bias in Human Transcriptomes Skews Reference Gene Maps
The Scientistgeneral

Ancestry Bias in Human Transcriptomes Skews Reference Gene Maps

<a href="https://news.google.com/rss/articles/CBMiugFBVV95cUxQSi1QSXVkMWJVV2poQ3IwN0o1dlJiQlBCVW9Ud2xabFlWNVN4STRMSDZXNTRpQUpNZDJiS0VRaUp4cGV1TGlSZ0preUZoanBpeWVCelpETFR1cGp6emNaYk01a29Mek5TMDBPRi14c3VvTGp0TERIXzh6dFBjZV8yTjd0UGxwbDMzTHRUeHI1RFZsOVdvWk82YmFYU1hRSmZUY0dIVzBMTFdjZTBWYW9IM183c0Q3STZLSVE?oc=5" target="_blank">Ancestry Bias in Human Transcriptomes Skews Reference Gene Maps</a>  <font color="#6f6f6f">The Scientist</font>

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Handling biological replicates in long-read RNA sequencing data by joining or not joining
Naturegeneral

Handling biological replicates in long-read RNA sequencing data by joining or not joining

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE8walhVVkxWOC1iNHZDZllTM096ZlR5OTRseTBwSWk5TnIzS0R5M1owSnVVTlVra1I1dEhwenpwclBjbHZRM1FfRHR5b3pad0REWmhGckxoMW9vSE8wRmZj?oc=5" target="_blank">Handling biological replicates in long-read RNA sequencing data by joining or not joining</a>  <font color="#6f6f6f">Nature</font>

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Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation
Naturegeneral

Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE16alRGdWI2MHUxRzkzOF9pRUkzMmlFLW1BSVpSVEFLSXpteXJnSGdidGc4R1JxM0xrNGFCcHlBeE8yT0lWQjBpSVI5aXo3ZWFJcTViMnRtWkdZYjZxUlZN?oc=5" target="_blank">Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation</a>  <font color="#6f6f6f">Nature</font>

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Long-read assembly reveals vast transcriptional complexity in the placenta associated with metabolic and endocrine function
Natureworld

Long-read assembly reveals vast transcriptional complexity in the placenta associated with metabolic and endocrine function

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1ncHN5dkRNeEF4dGpHNGRrcjEyUHcyTHFzcmFDTjJOMDNhR3d1XzhRMFMxZWNQX0RiUTBQSTI4Q1JMRllmQUtSVWd6dWtDc0ZGbjVUOTFBYU9taUl0OUdV?oc=5" target="_blank">Long-read assembly reveals vast transcriptional complexity in the placenta associated with metabolic and endocrine function</a>  <font color="#6f6f6f">Nature</font>

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Profiling maize embryonic leaf development and discovering new genes using high-resolution spatial long-read isoform sequencing
Naturetech

Profiling maize embryonic leaf development and discovering new genes using high-resolution spatial long-read isoform sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE80N3dSMnVKLVI0YTk5OW9CZjN6azBxRmVMa01lZnQyOFZfSzd3SmdlakFVNGpLYmh1TW9WX3YzU1hqUDRmWmFldEZsQ1lWVU5FaWI3bXBMNXVXM3JxU2dj?oc=5" target="_blank">Profiling maize embryonic leaf development and discovering new genes using high-resolution spatial long-read isoform sequencing</a>  <font color="#6f6f6f">Nature</font>

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Native long-read RNA sequencing of human monocytes reveals activation-induced alternative splicing toward functional isoforms
Natureworld

Native long-read RNA sequencing of human monocytes reveals activation-induced alternative splicing toward functional isoforms

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBEYWJ4Qk9HeWxlMVlqT2FIQ3JPN0kxNVpUUGc3NkItT0RrMlZUdTdKcTNzc1lzZzR0TnB3cVkzT0ZFbHJma2FxNm1lcWl5Wl9UWXhYOUJEblFHYjJ6ZmpJ?oc=5" target="_blank">Native long-read RNA sequencing of human monocytes reveals activation-induced alternative splicing toward functional isoforms</a>  <font color="#6f6f6f">Nature</font>

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Expanding the genetic landscape of inherited metabolic diseases using long-read sequencing and transcriptomic profiling | European Journal of Human Genetics
Natureworld

Expanding the genetic landscape of inherited metabolic diseases using long-read sequencing and transcriptomic profiling | European Journal of Human Genetics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9FeEM4UXVlZG1paXZXMVJqMHpXOFlEZzlZVEpKeTdjbVd0R1pvQUFOOGE2dVdKVVlqQU40NEtBeGlNZ3A3UEZNVzk5ZzRJcmpGWV9VSTFkcGx6MFFleV9N?oc=5" target="_blank">Expanding the genetic landscape of inherited metabolic diseases using long-read sequencing and transcriptomic profiling | European Journal of Human Genetics</a>  <font color="#6f6f6f">Nature</font>

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HiFi long-read RNA sequencing enhances clinical diagnostics in rare disorders
Naturegeneral

HiFi long-read RNA sequencing enhances clinical diagnostics in rare disorders

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5JRVFmVE1pRHRNWHRJU21ZTnczc2tVb2hvUzhOZEVYTTBZVXFaVnltNUk0bnNUSTc0VXRjQTRVcS1Ld3QtdEdaX3pZT1UtbloyT2JXaFN0c3NzWHQwTF8w?oc=5" target="_blank">HiFi long-read RNA sequencing enhances clinical diagnostics in rare disorders</a>  <font color="#6f6f6f">Nature</font>

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Mapping glioblastoma’s isoform diversity using long-read single-cell analysis
Naturegeneral

Mapping glioblastoma’s isoform diversity using long-read single-cell analysis

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA2RGVMMmlRQTd5eVVmdDdvQ2E1LXZMcThJZHA1THMwd0lVSWJ1WG9WeGFFYWZZLVoxTTVyMF93a0gwOHJlYkFqQlp0bXloS0kzbDY3R3JiMFM2Z1NHTjRr?oc=5" target="_blank">Mapping glioblastoma’s isoform diversity using long-read single-cell analysis</a>  <font color="#6f6f6f">Nature</font>

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TUSCO: benchmarking transcriptome reconstruction with endogenous single-isoform controls
Naturegeneral

TUSCO: benchmarking transcriptome reconstruction with endogenous single-isoform controls

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBvc2NhZS1lZUFwT1d6Y05QeFV0b0lzQmpyVUZHTEZYTkxmbENWOV85R21leU5DRzBCWTI4aHN5MENDaUN1OXRKUDc4d2RWZ3ZDWTV5NmhIa0VRVUloRndN?oc=5" target="_blank">TUSCO: benchmarking transcriptome reconstruction with endogenous single-isoform controls</a>  <font color="#6f6f6f">Nature</font>

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A practical guide to targeted single-cell RNA sequencing technologies
Naturetech

A practical guide to targeted single-cell RNA sequencing technologies

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1aU0VaTmdhTFdsb0h2ano2Ym84RkFLd0dyREpOUkRROGRzLW5HQWRMTnlkM0V1b3I2SzVPRm1rYkZrYVFhWHV4ZlFPNEhySlBlUzNUejdxaktWR1NZaW1z?oc=5" target="_blank">A practical guide to targeted single-cell RNA sequencing technologies</a>  <font color="#6f6f6f">Nature</font>

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Transcriptomics in the era of long-read sequencing
Naturegeneral

Transcriptomics in the era of long-read sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5YY0MzQllQV3NXdTFGUkhxelpybUU4NE1tb0JxVXMxblVzY09PMVNvLUdwYzlqNXpWUmJhOEVxajZhRDFMbkhPay1wcS1JYlVvemxScWxYcUNDTGlZZm84?oc=5" target="_blank">Transcriptomics in the era of long-read sequencing</a>  <font color="#6f6f6f">Nature</font>

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Long-read sequencing disentangles isoform complexity at allele-specific loci
Naturegeneral

Long-read sequencing disentangles isoform complexity at allele-specific loci

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFA4RHQ3TV9PU0lnMThZc3JzeWxISlVBN2xFbUM5dHVLWVZVSHkwUEk5b2JCaGZpbGVBS294cUVPYUJTNElsUDBLWjdZcWRxa25ieS1wTk92UmhZNXVjbXQ0?oc=5" target="_blank">Long-read sequencing disentangles isoform complexity at allele-specific loci</a>  <font color="#6f6f6f">Nature</font>

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Long-read RNA sequencing dataset of human pancreatic cancer cell lines
Naturegeneral

Long-read RNA sequencing dataset of human pancreatic cancer cell lines

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9aZUdweXNuRXk0ZXF1amVVWjBnNTA5N1lPWXVhak02cEt5dHpLZVN6WGJ1TmRvTWhIZ0plc25EbVBPVEdtQXRkSUJvZ0MwRld4UWg0ZGtrVXdBYk1WWXRV?oc=5" target="_blank">Long-read RNA sequencing dataset of human pancreatic cancer cell lines</a>  <font color="#6f6f6f">Nature</font>

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Integrating Iso-seq and RNA-seq data for the reannotation of the killifish telencephalon transcriptome
Naturegeneral

Integrating Iso-seq and RNA-seq data for the reannotation of the killifish telencephalon transcriptome

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5sZUVmTGk1WVdZc0d1aUZTelZtWFlZaXdwT0hveDBfX0g2RWhPY1lGSTFwUk5ZZnd4N1U3cGg5VUEwRlJIdzBNVk8yalkyUE0zbk9yS2k5RGd2RTFuWUNj?oc=5" target="_blank">Integrating Iso-seq and RNA-seq data for the reannotation of the killifish telencephalon transcriptome</a>  <font color="#6f6f6f">Nature</font>

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A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types
Naturegeneral

A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE8wcHNlLUJ1WG51Q0hhRVJJTjhOb1VmeXFjeHBabFF1MEF5WXg4OVFSZ1lQZERzSUFPTXNzWnA2YlRoZmRIeVNyTUctbVExWk9BWjRpRHBTcG1INi1zeENB?oc=5" target="_blank">A spatial long-read approach at near-single-cell resolution reveals developmental regulation of splicing and polyadenylation sites in distinct cortical layers and cell types</a>  <font color="#6f6f6f">Nature</font>

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A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
Naturegeneral

A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFByN2hmbjN3ak5tRHc2eWVJUHBsRm8xblU0RVNOQmJXdlVtUjNIZklZblFQNkxaemJKblluTDA5dEVMR3AtRnBpUWo3dnBfU2lqeUEwREprX3luak9yX3VJ?oc=5" target="_blank">A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines</a>  <font color="#6f6f6f">Nature</font>

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Single cell and spatial alternative splicing analysis with Nanopore long read sequencing
Naturegeneral

Single cell and spatial alternative splicing analysis with Nanopore long read sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9CUVVQSThoZVI2VGIzM1oxVDhsMDFzbEVLaDRNY0p5UXRoVnFzSThWWmw5QkJubDJHNjRrR0tkUFAxTzJJdHdTZWlkQkNwWXJxUVVpbWpONnhUTmd6TE4w?oc=5" target="_blank">Single cell and spatial alternative splicing analysis with Nanopore long read sequencing</a>  <font color="#6f6f6f">Nature</font>

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Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
Naturegeneral

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9SbnZONGFzMlR6ZXZzWWl3cGZoSF91M3h6aFlkQ2JkMkRyXzdVbFpJOU5uQXBZMUM3SEN2NnhwcHUweXhqRlRtU3d6NllxMnhtNzBmOTFfMDV2SGNwR2lZ?oc=5" target="_blank">Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2</a>  <font color="#6f6f6f">Nature</font>

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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Naturegeneral

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5CVUVuSHJJUHFTOXMwaWdsSVMybTFXZ2U0SmZERFBkRG1fV29KZkNzMXR3VzJyOVU3MFZSYlpvSnptZE5PTFI2Wjk0WWdZNkszTVJpdUxIRld3VGM0eUcw?oc=5" target="_blank">Systematic assessment of long-read RNA-seq methods for transcript identification and quantification</a>  <font color="#6f6f6f">Nature</font>

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Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer
Naturegeneral

Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBHN1FmRlZ5TUQ1MU1kWGNmbEdQejd4bC1XOWhQTmdKWXJxQmVMWHFERFFpR2ZxdE5pcnJkcENCNGFScGFhWmxMdlQzb0hjaDM4SGpEUG5lRENGakhETFJz?oc=5" target="_blank">Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer</a>  <font color="#6f6f6f">Nature</font>

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Transcriptome variation in human tissues revealed by long-read sequencing
Naturegeneral

Transcriptome variation in human tissues revealed by long-read sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBGX0ZlbXJZSUZhQlBmSjVJU2hQTkI4eVlaVk1sOHFqNHJSMFJta1NMTThGbkU0cm9EeFRkMWRBMVdzaHYxZldaUmxhNl9mUmtJd0xFZ29STEN6cTRCLTFF?oc=5" target="_blank">Transcriptome variation in human tissues revealed by long-read sequencing</a>  <font color="#6f6f6f">Nature</font>

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Integrative genotyping of cancer and immune phenotypes by long-read sequencing
Natureworld

Integrative genotyping of cancer and immune phenotypes by long-read sequencing

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5qZnctSzhjZmtNQzkyZ3JlVjBIZGNWNGFZdkJkZHVrSlg3M0tFLVRZUXpLT1lnc2RDaUppZV9KcEhfRU5kdEt1ZmhvYTVpbkFfVkZ3XzZZalZxYjB4U3hz?oc=5" target="_blank">Integrative genotyping of cancer and immune phenotypes by long-read sequencing</a>  <font color="#6f6f6f">Nature</font>

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