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Category:All HeadlinesWorld & GeopoliticsMarkets & EconomyTech & AIPoliticsSearch results for: "Inference of spatial chromatin" (30 stories)

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Inference of spatial chromatin accessibility via integration of spatial transcriptomics and single-cell multi-omics data
Lead StoryNaturegeneral
Jun 4

Inference of spatial chromatin accessibility via integration of spatial transcriptomics and single-cell multi-omics data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE43WUZBZ1pCRHk3a3VnaHVPTldmWVp6YVRQNjhJQlg3N0otNnNoR0NXQlZUYWJXd3JqVGxUQjVXdWN1cFNYMFZvR3VMcXI5RGE0cFluNVpoR3JNWVAxRUlJ?oc=5" target="_blank">Inference of spatial chromatin accessibility via integration of spatial transcriptomics and single-cell multi-omics data</a>  <font color="#6f6f6f">Nature</font>

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Search Results for "Inference of spatial chromatin"

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29 stories displayed
SpaDC enables sequence-based integrative analysis and regulatory inference of spatial chromatin accessibility data
Naturegeneral

SpaDC enables sequence-based integrative analysis and regulatory inference of spatial chromatin accessibility data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5URjQwSnpTQmtlSWRFYkd0ODdlN0RyZzJ3QVBjbW9LTXM3b2w2WnpQR3pzOXJsUWZTTU1xV05QckJJTmpuNi0tR0NfUF9FMnBIZS13RVZrbm5oM3F1clJz?oc=5" target="_blank">SpaDC enables sequence-based integrative analysis and regulatory inference of spatial chromatin accessibility data</a>  <font color="#6f6f6f">Nature</font>

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VSMC phenotypic switching in thoracic aortic aneurysm at single-cell resolution: Trajectories, regulatory circuits, and spatial niches
Wiley Online Librarygeneral

VSMC phenotypic switching in thoracic aortic aneurysm at single-cell resolution: Trajectories, regulatory circuits, and spatial niches

<a href="https://news.google.com/rss/articles/CBMia0FVX3lxTFBadll6UFdvMVdpZmhZdnExazhQNF9TMENMeFExUGpoVzZUWWF5ek5YMzN5TzRUajJramxzTFB3dk5OUmRwZG9GdVBIYmI0UG1ZYkJ1d2w5QmlXT2R2WUpITU96ZVhHZzljbElr?oc=5" target="_blank">VSMC phenotypic switching in thoracic aortic aneurysm at single-cell resolution: Trajectories, regulatory circuits, and spatial niches</a>  <font color="#6f6f6f">Wiley Online Library</font>

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CoxFormer enables spatial omics inference with multimodal generative modeling
Naturegeneral

CoxFormer enables spatial omics inference with multimodal generative modeling

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5mOWI4ZUFjVGZPbXZ6dnFXZTNfMVlHM0JmemxqZjB6bVZPY1ZpeWdBNElMNGhUVV9vdXN4WEdvaDZVN1FzYjMyZGZ1S0NqWTdCWDhMd1RUN2Q2SW80Umpj?oc=5" target="_blank">CoxFormer enables spatial omics inference with multimodal generative modeling</a>  <font color="#6f6f6f">Nature</font>

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Spatial Epigenomics: Mapping Chromatin in Tissue Context
Technology Networksgeneral

Spatial Epigenomics: Mapping Chromatin in Tissue Context

<a href="https://news.google.com/rss/articles/CBMiuAFBVV95cUxQaGRtOFRmRmxBYm9Vc2luaUZKSGtFWksxMUp4czZ6WlVSNDNyYzdOdlMxV1VHOEFXb3d6bEttV1MtWjN2SnNvTERmRlg4OFJPODVyV285U1Q4WmlKQWtQZkZRUVdNRTBzczZLM1lXVGdpeENOXzI1NktfcWNFcmNuTVkwNXZPNVVoX3BqLWtvR2xsSWJaY1pUQTVTekxONExkUEpxVVFmWnZISS1Dc2xMdjh6SVZNVTBv?oc=5" target="_blank">Spatial Epigenomics: Mapping Chromatin in Tissue Context</a>  <font color="#6f6f6f">Technology Networks</font>

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Penn engineers use AI to solve some of science’s most difficult math problems
The Brighter Side of Newstech

Penn engineers use AI to solve some of science’s most difficult math problems

<a href="https://news.google.com/rss/articles/CBMitgFBVV95cUxNblUyQnZ5djljSmlCQy1XWHdOTEhwczZjYzY1S1doLVJqamp6eHhxVWxKTElxRlpaQWlLOVR4ZmIyUkl1MHlCY3NicFhDTE9jT0hBR3pGUjZYNTlZUDM5eDJmZS1CblI1ZTBJWGlEUDJaM1NneW04M0JwTndNeUhLR1RuYW9KOUNPdktqOE5PWGtCbWZHWGx5dUxiSG9qamtXY1UzV1BNbkJxRk5MaXNhTV9SN1Z0QQ?oc=5" target="_blank">Penn engineers use AI to solve some of science’s most difficult math problems</a>  <font color="#6f6f6f">The Brighter Side of News</font>

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Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology
Natureworld

Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE02ZFJwUFpvR3ZlTzVrbkRPTUVodURsVExoMEt2YnNiOVotT0RjMUlwal91S1VhVk1OQTRWVHljYi03NXJoSzI2Ui1fZDluWmpGZ0I2OTNsdmR6NGQzbzdR?oc=5" target="_blank">Smoothie: efficient inference and integration of spatial co-expression networks from denoised spatial transcriptomics data | Communications Biology</a>  <font color="#6f6f6f">Nature</font>

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szKendall: spatial-structural-zero-aware dissimilarity measures for subtype discovery using single cell Hi-C data
Naturegeneral

szKendall: spatial-structural-zero-aware dissimilarity measures for subtype discovery using single cell Hi-C data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBsV09YX0tGeGE4YlZCTVhJR1NvWExYQVpOM3k1SzVxdG9MVE5peG44YWxrYkFzZnY0VVR5RFFxTG5qX2ktY2F1bUVpdVVmaTNxcVREWmw2Y1IySTdYbV8w?oc=5" target="_blank">szKendall: spatial-structural-zero-aware dissimilarity measures for subtype discovery using single cell Hi-C data</a>  <font color="#6f6f6f">Nature</font>

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Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT
Naturegeneral

Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE40eWw1aGtMWVI5RzNJcGtSd2RWdGRpMklTU1lTWXo0dktWRGlHTFROWlo5UHU3dVBNSXBMc1I2YXpITjgzMUhVZ1BPbExzX1piTVhpUkVYU2lIYXpMWDZr?oc=5" target="_blank">Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT</a>  <font color="#6f6f6f">Nature</font>

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MultiGATE: integrative analysis and regulatory inference in spatial multi-omics data via graph representation learning
Naturegeneral

MultiGATE: integrative analysis and regulatory inference in spatial multi-omics data via graph representation learning

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1lMjViZjN3MmpBS1JXZUhKaV9YdzB4LWZjenZrQjhialEzR2M5ZTEwN05sdjFIUGlfSEpKSDN1bzdKNi13eG8zNHNVV2kwSVhqRlNxQklhUm5qak80UkVj?oc=5" target="_blank">MultiGATE: integrative analysis and regulatory inference in spatial multi-omics data via graph representation learning</a>  <font color="#6f6f6f">Nature</font>

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Spatial patterning of the epigenome during vertebrate gastrulation
Naturegeneral

Spatial patterning of the epigenome during vertebrate gastrulation

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5aQUZsYnprVGdGNldvLWc3a1JMZDFIX0IzektLUENWcjQ0cEd2WURXd19wcnBFX29peVNFLUtGcHlzTUVIcFhCd1J6VTYtdmljUWxUR2NBS1dZZC13MWVZ?oc=5" target="_blank">Spatial patterning of the epigenome during vertebrate gastrulation</a>  <font color="#6f6f6f">Nature</font>

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Robust characterization and interpretation of rare pathogenic cell populations from spatial omics using GARDEN
Naturegeneral

Robust characterization and interpretation of rare pathogenic cell populations from spatial omics using GARDEN

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9idm1iVVRkUk9QNmgzeC1xb2ptOWM5Q1RQSVNScy1LV2hrTndKVHdIY0FteGN4SVpraHVWS29JSVI5dXFRbXg2MmZNX0lHYUxiNmlweUw2X2NQZzlaQTRz?oc=5" target="_blank">Robust characterization and interpretation of rare pathogenic cell populations from spatial omics using GARDEN</a>  <font color="#6f6f6f">Nature</font>

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INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Naturetech

INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5jRWJlWGkwV1Mzb0VhbzF1VTRhLUVuZlk0NEI5NWlaNi1BMjQ2eWNuMTNKNDRLZUc1aHBERmc0Y01KVGtld283bXRuOE1PSjdLWThxWm5hTXFJdHIzZ2Fv?oc=5" target="_blank">INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation</a>  <font color="#6f6f6f">Nature</font>

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Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes
Naturegeneral

Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBGZWJtLUFQVDBCelVxWXpEYTQxU3VIcmhneVl1NWNUcTI4UDgzT0dWOHVKZHJRMDNXdW9KOEZ1bjVpQmZzTTQxelhmQUktVlBtUmNJWTZfX2ZLb3hUNV9R?oc=5" target="_blank">Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes</a>  <font color="#6f6f6f">Nature</font>

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Spatial profiling of chromatin accessibility in mouse and human tissues
Naturegeneral

Spatial profiling of chromatin accessibility in mouse and human tissues

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1QakRoMkFDUjRBY1JnWDkxN05Zb1UzSHNRQmlwNzA4SU5ZX2RvMURHd29nZmh4b3JkYmk2V29tMjhtamZEZk5CdXZQbFVpVTlIcDdESlZBRlF1NHdUc0kw?oc=5" target="_blank">Spatial profiling of chromatin accessibility in mouse and human tissues</a>  <font color="#6f6f6f">Nature</font>

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Spatial-aware detection of copy number alterations from spatial transcriptomics using SpaCNA
Naturegeneral

Spatial-aware detection of copy number alterations from spatial transcriptomics using SpaCNA

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE81bDg2TTdZT1gxY09LY1JsRzdUUmI1Vm9HZnk2MjVwVGRWdERUMk50TE9rM3JNZ2k4T1pod3BHTExsNXZ6bG05cE1qR2Jkd0lmYURiNktiLXpIMDVkdEhV?oc=5" target="_blank">Spatial-aware detection of copy number alterations from spatial transcriptomics using SpaCNA</a>  <font color="#6f6f6f">Nature</font>

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A computational pipeline for spatial mechano-transcriptomics
Naturegeneral

A computational pipeline for spatial mechano-transcriptomics

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9KLU9JNEwwbWlIQVREcVZWQjBjNnlaU0xIMUNFNnJCU25QcmJ4b05oUnZrT0d4M0trZ1NBdlF5LWtkTnRvYi1RVTFacEYtT2V2RE81N1N4LUdKOWs5Ykdj?oc=5" target="_blank">A computational pipeline for spatial mechano-transcriptomics</a>  <font color="#6f6f6f">Nature</font>

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Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner
Naturegeneral

Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBsb2ZrVW8wYkxWSWsxazVleG5xbWRXSmJkZDE0YmlfUVlNVUlTdUtMQUsyTHFmYUdITUhublNfbzE3MTllcFJJa0h1N2RKdmdYUG9qRGtRQnljeE9EUm5N?oc=5" target="_blank">Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner</a>  <font color="#6f6f6f">Nature</font>

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SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data
Naturegeneral

SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE9LOGY4V3RLR21zcGY5Nk5HMnR0cjk0czJNLUlnRFVGT2lkcU9tTjByTGt6cUEyY0ZWcDlOSzBmc3RYTGU1S084d0FaNEtlRF9OS2tmMzFld000Wnpwenlz?oc=5" target="_blank">SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data</a>  <font color="#6f6f6f">Nature</font>

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Mapping cells through time and space with moscot
Naturescience

Mapping cells through time and space with moscot

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1UbHBnN2hxakxXemxhVVVBVkFzUm1Zam1qa1h3SXU1dDdJVTl1TC1EN21sZnV6Y2hrdlRKTTFma1BTckxueWJ3Z09kb3lzZEFPYVhteVFmeEJrTDlJazQ4?oc=5" target="_blank">Mapping cells through time and space with moscot</a>  <font color="#6f6f6f">Nature</font>

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Spatial organization, chromatin accessibility and gene-regulatory programs defining mouse sensory neurons
Naturegeneral

Spatial organization, chromatin accessibility and gene-regulatory programs defining mouse sensory neurons

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBockdVS3NrLXdzeHJIdUVCSTM3cTVFZjFTd2llY0xuaHVFZWdLbmpEUm9BdWc5a0UzdHNZUWVqZWNnOGIzZUF2Z3h2emZXTFplRzQ3b0VZSkVuTUp6TUVj?oc=5" target="_blank">Spatial organization, chromatin accessibility and gene-regulatory programs defining mouse sensory neurons</a>  <font color="#6f6f6f">Nature</font>

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Decoding cardiac homeostasis and injury: the evolving landscape of spatial transcriptomics
Frontiersgeneral

Decoding cardiac homeostasis and injury: the evolving landscape of spatial transcriptomics

<a href="https://news.google.com/rss/articles/CBMirAFBVV95cUxPb0gxNWlVNHRIaHFRR0txUDliRTFwOFNwMVBKYnFyY3pSN0haR3BTWEp6dXgwdHJ2NDhDaHFUcENKc1JpUk5SS2M0Q05Pdmx0Mm1HVHhJbzhfUF9QVm8zQThxTlBvLXdzSExxUVREOXAtZTZGWUI1b3lyZ2F5clBUdjdMcE55MGxYNWlLQUQycFFlVWp2TUdOYmtSQUpGOVdrTU84NVF4RGxjd1Z6?oc=5" target="_blank">Decoding cardiac homeostasis and injury: the evolving landscape of spatial transcriptomics</a>  <font color="#6f6f6f">Frontiers</font>

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Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM
Naturegeneral

Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5SWElZcHdSMDhUMTNKSG5iYVBfMjBSNG5oWnNBN1p3ajB4eXNNdW9VU2s5UTU3NDRPSW5fekNiaXp3TGo5MmhjU2FET0pUMU04MmotVFB2cU5CV21tUklB?oc=5" target="_blank">Mapping isoforms and regulatory mechanisms from spatial transcriptomics data with SPLISOSM</a>  <font color="#6f6f6f">Nature</font>

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GraphVelo allows for accurate inference of multimodal velocities and molecular mechanisms for single cells
Naturegeneral

GraphVelo allows for accurate inference of multimodal velocities and molecular mechanisms for single cells

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE1kTXhUMzhTTlQxR0lrallETXFQejZpRERSMjVjR3FIZmc5V1NXd2FQNmNVV3dpTnZqOVlhYWZEcWFQdWxZZmQyT0JrV3BBc3JPcFhCYXctU1drOGpMVjBB?oc=5" target="_blank">GraphVelo allows for accurate inference of multimodal velocities and molecular mechanisms for single cells</a>  <font color="#6f6f6f">Nature</font>

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Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model
Naturegeneral

Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5ZLVItdDhyc2pRbjh4eWJKeUV2NTEyZjJ6QnU0cjE2UVlPZmNvS3pSTXp1aVQ2QlN4M2RQdDhDU3NON1NJTWxBNS1lRVVJa3puWmhBZktYQzh1SkxaOGp3?oc=5" target="_blank">Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model</a>  <font color="#6f6f6f">Nature</font>

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Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease
Naturegeneral

Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFAyWG9IVGlPSkc5elVYS1ozRHZ3WE56eHBVTEM0QTFXb1k0MjdRbVN4T3RNOENaN1F0cGpNWHVHd2ZYbXRtNWc2bFNpMU8tR2ZrNEY0X1Q2eXhMZ3pkcEpv?oc=5" target="_blank">Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease</a>  <font color="#6f6f6f">Nature</font>

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CellLoop: Identifying single-cell 3D genome chromatin loops
Naturegeneral

CellLoop: Identifying single-cell 3D genome chromatin loops

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFB4MHI0dFY1WnpKRVJNaWhaZGdaVjdOcjVSOU5hbDNCMjRNY3JHN011Q2FaaExYWktORmFXOVZycmV0TkphU3JNdFY4WEpweXZ4SVAyZ1VHUjZEVXNILWU0?oc=5" target="_blank">CellLoop: Identifying single-cell 3D genome chromatin loops</a>  <font color="#6f6f6f">Nature</font>

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SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
Naturegeneral

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTFBsdkVMMTRQRzhxb0NvTnJaY0NhaW43QzdndHVwTUFyaHMtTTBESVM1VVNzSWlUbm5hMXZ0RTduaVc0eUdzaU45RzZaWkxEb1RUel83RlNxSWZvVm9LRDBr?oc=5" target="_blank">SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks</a>  <font color="#6f6f6f">Nature</font>

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Unravelling tumour spatiotemporal heterogeneity using spatial multimodal data
Wiley Online Libraryworld

Unravelling tumour spatiotemporal heterogeneity using spatial multimodal data

<a href="https://news.google.com/rss/articles/CBMia0FVX3lxTFBmakJuVUZGdzhrS2hpQ2djSWVhV2t0Mi05U3czRkM0OHlvYVF6SkNvQkV5THJoeGdNRzNjai1lZTNMSmVKcmZGTkFXdW91bHhnbnFxdXo3OElyU2pKT2FtUzVlV09FVFhDN0VB?oc=5" target="_blank">Unravelling tumour spatiotemporal heterogeneity using spatial multimodal data</a>  <font color="#6f6f6f">Wiley Online Library</font>

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Hi-Compass: a depth-aware deep learning framework for predicting cell-type-specific 3D genome organization from single-cell to spatial resolution
Naturegeneral

Hi-Compass: a depth-aware deep learning framework for predicting cell-type-specific 3D genome organization from single-cell to spatial resolution

<a href="https://news.google.com/rss/articles/CBMiX0FVX3lxTE5kMlZmbzFiUGJ1TjRpYnNlcFdzcU5XdXRqN1ExbjU1ajVKY1FCQXh4YU0ta2g4UVdhNDB5U1V5NG5DVkt0QnJ5UWoxOWtjVnpnSi1vQUE3UzY5M2tsYkxJ?oc=5" target="_blank">Hi-Compass: a depth-aware deep learning framework for predicting cell-type-specific 3D genome organization from single-cell to spatial resolution</a>  <font color="#6f6f6f">Nature</font>

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"Inference of spatial chromatin" — Live Google News Trends & Headlines